K10121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10121

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10121

Determination of introduced cDNA(s)

  • J013000D21 - Rice Full-length cDNAs - Original: J013000D21

    full reading [+] show sequence

    Nucleotide sequence: J013000D21 - full reading
    GAAGCGATTC CCCTTCGTAG TTGTCCGCAC TCGCGCGTCG CTCGCCGGCC 
    ATCGCCGCCG CCGCCGCCGC CGTCGCCGGT CGCAGGCCCG CCTCGGCCTC
    CCCTGTCTCT GTCTCCATCC TCGTCTGCCC TCCGCCTGGC GCCCATCGCC
    TTCCGCCGTC CATCCGCGGT GCTTCCGTAC TCTGTTCCCA TGGCGGCGGC
    GGCGGTGGAG GAGGGAGGCG GCGGTGGTGC CGTGGCGCGG ATCTTCGTGG
    GTGGTATTTC GGAGGGCGTG GCGGCCGCCG ACCTGGAGGC CATGTTCGCC
    TCCGTCGGCC GCGTCGCCGG CGTCGAGTTC GTGCGCACCA ACGGCCGCAG
    CTTCGCCTAC GTCGACTTCC ACTGCCCCTC CGACAAGGCT CTCGCCAAGC
    TCTTCTCCAC CTACAATGGG TGTAAGTGGA AAGGGGGAAA ACTTAGGCTG
    GAGAAGGCTA AGGAGCACTA CCTTACTCGC CTGAAGCGTG AATGGGAGCA
    GGAAGCGGCA GCGGCGCAGG AAATGCCAGC TAGTGCTGAT GTGGAGAGCA
    AGAAGGAGAA GCTCGAGCTG AATAAGGCTG TTTTGGATAG TACGAAGATT
    AACATCTACT TCCCAAAACT GAGGAAGGTG AAAGCCTTGC CTTTTAAAGG
    CACTGGAAAG CACAAATACA GTTTCCGGCA TATCGAAGTC CCTTCTTACC
    CAATTCATTT TTGTGACTGT GAGGAGCACT GTGGACCTCC AGAGGCAGCT
    AATGATGAAT ATGCTTCTGT TCTTGATGCT GCTGCATATG AAAAGGAGCG
    CAGTATTATG AATTCTGTGA TGAGCAAGCT CTTTGAGAAG GAGAATGACC
    ATTTAGATTC AATGGAAATT CAGAATCATG GTGTCGATTT TGATGCCGCG
    GAACCCTCTA ACGCCAGGAA TGAGTTGCAA ATGGATAAAA GAGAAGAAAC
    TTCTGAGGAA GATTTGGATG ACCAAATGGA AGAAACAGAA GATCCTTCTG
    AGGAAGAATT GGATGATCTC GTGCTTAACA TCGTGACTTG CAAGCCAAAA
    AGCTCTGTAG CACAATTGAA TAGCGAAAAG CAAGCAGCGG ATAAGGACTC
    GCGCTTCAGA AAACGTCAAC AATTTGAAGA ATCTTCTCTG CAGAAGAGGC
    ATAAATCCTC TGATTTCTCT GAAACTAGAA ATAGGAAACA GTCTTTCCCT
    GCTATATCAG GAGCCATCCA AAATGAACAA AAATCTTCAG ATTTGTCAGG
    AAAAGGTACA CATGAGTTCT CATCAGAACT CGATGGAGAT AAAAGTTCTG
    CTAGTGTCCA AGATGTTGAA GCACTAGCAG ATTCTTCTAC CAGAAATGGG
    AGTGAACAAA ATTCGCTTGC TAGTGAACCT AAAAGAGTTT CCTTGTGGAC
    TCAGAAATCT GCCTGGAGGG ATCTTGTTGG TGGCATGGGG AGTGCATCTT
    TCAGTCTATC ACAAATATTG CCAAACACCA ATCCAGCACC ACCAAAAGTT
    TCAAATGCTA CCGAGGCCTC TGCTTCACAT GCTGAGTCCA GGACGAAAGT
    GAAACCAAGC GGGAAATCTT TGAAACCCTC GGAAGCTGCA ACTCAGCTCT
    TGCCTGAGCA GAAGATGCCT ACAAGTTCCA TGGCAATGCT GTCTAGTGAG
    CGTAAGGAGA ATAATAAGCT GGAAAAGGAG AGGGTGGTTC CAAAGATCAC
    TATTGGTGAA GTGTGTCCGT TCATGAGAAA TTCAGAGTCA GAAAAGCAAT
    GGTCAAAGGC AAAGAAGGTT CTGACTGGTT TCATCAAGAA GGGCAATGAG
    AGCACTGGAT CGAATGTCGG GAAAGGGAAG CCATCAACAA GGAGATAACA
    ACGTAGCATG TCATTCCAGC TTCATCTTGT TGAACTACAA GCTCGGTAGC
    ATGTCATTCC AGCTTCATCT TGTTGAACTA CAAGCTCGGT GGTTTCGTGT
    CTCATAGGAA CATGTGTTAT TTTGTTGATT GGTCTCATAG TCTGCCTGTT
    AAGAATGATC TGTCTTTGTT TGTGAAGCAC AATGCTATGT ACGAGTTTTG
    TTCAAATTGT TATTATTCTT TGTACGAGCA ATTTAAAGTC AAACATGTTT
    CAAAAAGCG

    Gene models with high sequence identity

    1. AT5G58130.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-52; Score: 204.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 3.2e-05
    ProfileScan RNA recognition motif, RNP-1 12.356
    HMMPanther TRANSCRIPTIONAL REGULATOR 2.1e-30
    Gene3D Nucleotide-binding, alpha-beta plait 9.1e-07
    superfamily RNA-binding domain, RBD 7.1e-11
    HMMSmart RNA recognition motif, RNP-1 1.4e-05

    See the detailed result >

    AT5G58130.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.
    Computational Description
    REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR