K10121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10121

Determination of introduced cDNA(s)

J013000D21 - Rice Full-length cDNAs - Original: J013000D21

full reading [+] show sequence

GAAGCGATTC CCCTTCGTAG TTGTCCGCAC TCGCGCGTCG CTCGCCGGCC 
ATCGCCGCCG CCGCCGCCGC CGTCGCCGGT CGCAGGCCCG CCTCGGCCTC 
CCCTGTCTCT GTCTCCATCC TCGTCTGCCC TCCGCCTGGC GCCCATCGCC 
TTCCGCCGTC CATCCGCGGT GCTTCCGTAC TCTGTTCCCA TGGCGGCGGC 
GGCGGTGGAG GAGGGAGGCG GCGGTGGTGC CGTGGCGCGG ATCTTCGTGG 
GTGGTATTTC GGAGGGCGTG GCGGCCGCCG ACCTGGAGGC CATGTTCGCC 
TCCGTCGGCC GCGTCGCCGG CGTCGAGTTC GTGCGCACCA ACGGCCGCAG 
CTTCGCCTAC GTCGACTTCC ACTGCCCCTC CGACAAGGCT CTCGCCAAGC 
TCTTCTCCAC CTACAATGGG TGTAAGTGGA AAGGGGGAAA ACTTAGGCTG 
GAGAAGGCTA AGGAGCACTA CCTTACTCGC CTGAAGCGTG AATGGGAGCA 
GGAAGCGGCA GCGGCGCAGG AAATGCCAGC TAGTGCTGAT GTGGAGAGCA 
AGAAGGAGAA GCTCGAGCTG AATAAGGCTG TTTTGGATAG TACGAAGATT 
AACATCTACT TCCCAAAACT GAGGAAGGTG AAAGCCTTGC CTTTTAAAGG 
CACTGGAAAG CACAAATACA GTTTCCGGCA TATCGAAGTC CCTTCTTACC 
CAATTCATTT TTGTGACTGT GAGGAGCACT GTGGACCTCC AGAGGCAGCT 
AATGATGAAT ATGCTTCTGT TCTTGATGCT GCTGCATATG AAAAGGAGCG 
CAGTATTATG AATTCTGTGA TGAGCAAGCT CTTTGAGAAG GAGAATGACC 
ATTTAGATTC AATGGAAATT CAGAATCATG GTGTCGATTT TGATGCCGCG 
GAACCCTCTA ACGCCAGGAA TGAGTTGCAA ATGGATAAAA GAGAAGAAAC 
TTCTGAGGAA GATTTGGATG ACCAAATGGA AGAAACAGAA GATCCTTCTG 
AGGAAGAATT GGATGATCTC GTGCTTAACA TCGTGACTTG CAAGCCAAAA 
AGCTCTGTAG CACAATTGAA TAGCGAAAAG CAAGCAGCGG ATAAGGACTC 
GCGCTTCAGA AAACGTCAAC AATTTGAAGA ATCTTCTCTG CAGAAGAGGC 
ATAAATCCTC TGATTTCTCT GAAACTAGAA ATAGGAAACA GTCTTTCCCT 
GCTATATCAG GAGCCATCCA AAATGAACAA AAATCTTCAG ATTTGTCAGG 
AAAAGGTACA CATGAGTTCT CATCAGAACT CGATGGAGAT AAAAGTTCTG 
CTAGTGTCCA AGATGTTGAA GCACTAGCAG ATTCTTCTAC CAGAAATGGG 
AGTGAACAAA ATTCGCTTGC TAGTGAACCT AAAAGAGTTT CCTTGTGGAC 
TCAGAAATCT GCCTGGAGGG ATCTTGTTGG TGGCATGGGG AGTGCATCTT 
TCAGTCTATC ACAAATATTG CCAAACACCA ATCCAGCACC ACCAAAAGTT 
TCAAATGCTA CCGAGGCCTC TGCTTCACAT GCTGAGTCCA GGACGAAAGT 
GAAACCAAGC GGGAAATCTT TGAAACCCTC GGAAGCTGCA ACTCAGCTCT 
TGCCTGAGCA GAAGATGCCT ACAAGTTCCA TGGCAATGCT GTCTAGTGAG 
CGTAAGGAGA ATAATAAGCT GGAAAAGGAG AGGGTGGTTC CAAAGATCAC 
TATTGGTGAA GTGTGTCCGT TCATGAGAAA TTCAGAGTCA GAAAAGCAAT 
GGTCAAAGGC AAAGAAGGTT CTGACTGGTT TCATCAAGAA GGGCAATGAG 
AGCACTGGAT CGAATGTCGG GAAAGGGAAG CCATCAACAA GGAGATAACA 
ACGTAGCATG TCATTCCAGC TTCATCTTGT TGAACTACAA GCTCGGTAGC 
ATGTCATTCC AGCTTCATCT TGTTGAACTA CAAGCTCGGT GGTTTCGTGT 
CTCATAGGAA CATGTGTTAT TTTGTTGATT GGTCTCATAG TCTGCCTGTT 
AAGAATGATC TGTCTTTGTT TGTGAAGCAC AATGCTATGT ACGAGTTTTG 
TTCAAATTGT TATTATTCTT TGTACGAGCA ATTTAAAGTC AAACATGTTT 
CAAAAAGCG

Gene models with high sequence identity

AT5G58130.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
E-value: 2e-52; Score: 204.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	RNA recognition motif, RNP-1	3.2e-05
ProfileScan	RNA recognition motif, RNP-1	12.356
HMMPanther	TRANSCRIPTIONAL REGULATOR	2.1e-30
Gene3D	Nucleotide-binding, alpha-beta plait	9.1e-07
superfamily	RNA-binding domain, RBD	7.1e-11
HMMSmart	RNA recognition motif, RNP-1	1.4e-05

See the detailed result >

AT5G58130.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Curator Summary: Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.
Computational Description: REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink).
Link: InterPro Scan - TAIR