K10126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10126

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10126

Determination of introduced cDNA(s)

  • J033094D12 - Rice Full-length cDNAs - Original: J033094D12

    full reading [+] show sequence

    Nucleotide sequence: J033094D12 - full reading 
    GATTCCCATT TCCTAAAAAA AAAATCCCCA AATCTCCACA TGATTCCTCC 
    GTAATTCGGC GCGCCCTCTC ATGGCGTCCC TCGCCGAATT CCCCCTCCCG 
    GTGATCTCTC CGACTTGCTG GAGCTATCGG TAGCGGGAGG AATCAATCAA 
    TCAATCCCCC ACGCTGGGTG GTTCTTGAGC AAGAACGGCT CGTCGCCGTG 
    CCGATCGATC ACGTCGGCCG CCGGGGAAAT CCTCTGGGGA TTTGTGGGTG 
    GTTTTGGGCT AAAGATTCCG TTTCTTTCGA GCCCTTTTGG TCTCGGGTGG 
    ATCCGCTTAG CTTTGGTTCT TTTGCTGGTT GGGGGGCATG GCGGCGGAGT 
    CGTCGGCTGC TGCTGCTGCG GGCGGGGGCG AGAGGAGGGG CCCGATGGAT 
    CTGAACCTGT ATCTCGGCCT CCCTCCGCTG CCGCCGCCTC CGGGAAGGCT 
    GGATGTCGCC GCCGATTACC CGTCGCTGCT GCTGAACTCC GCCGCCACGG 
    TGGCGAACGA GCAAAGGGGC TCGGTGGTGG TGGCGGCACC GCCTCCGGCG 
    GCGGCGGCGT ACTCGCCGTC GAACGCGCTG TCAGCGCCGG AGCAGGTGCT 
    GGTAGATCCT GTTGCAGCGT GGCTTGTTGA TCCCGGTGAG CAGCAGCCGG 
    TGCCGCCGCT CGAGACGCCA TCGTACATGG CCAGGGCCTC GTCGACGCTG 
    CCACAGATTT TTGCTTGTGC AGCGTTGGAA ATGCTTGTGC AGACCGGTGG 
    AGCAATCCCA CCTACTGGTC TTATAAGGGG AGCAGAGATT GCTGCTGCAA 
    GCCGCCCTAT GACGCCGGAG AATCGGCTGC GGAGGTTGAT CCAGGTGAGC 
    GATCAACACG GCGTCGGGAA TGGGAGGGCG GGGACTGGGC CAGTGAGCCG 
    CAGCCGACGG GCGAATAGCC CGGAAGCCGA TAATCTGGCG CGGGCCATCC 
    AGAGGTCTCA TAATTCTCTT GAGGCATCAA GGAGGCAGAT GCTTGATGGT 
    GATGGCAGTG ATGCCACCAA GAAGGATGAC GGTTGCGGAT GCAACGGCAG 
    CTTCGAATGC AATATCTGCT TTGAATCAGC TAAAGATCCT GTGGTTACCC 
    CTTGTGGCCA CCTCTTCTGC TGGCCTTGCA TATACCAGTG GCTTCATGGA 
    CATTCAGAGC ACTCTGATTG CCCTGTCTGC AAGGGCGAGG TGCTCGAAGT 
    AAACGTCACA CCGATTTATG GAAGAGGAGG TGGCGAGGAG AACTCCTCCA 
    GAAATGATAT CCAAATCCCT CCCAGGCCGA GTGCGCAGAG GACCGAGAGC 
    TTGAGGCAGC AGCTGCAAAG GCCAGACACA AGAGGAGGCA TTGCAAACAT 
    GGTGAGGCGG TTGATGCAAA ACCAAGATAT AGTGGTAGGC CAGGCGGCTT 
    CATCTGCACC CCGGCCAAGG GGTAGGGGTC GAAGGCAGGC AAGACAAGAT 
    GCGCCTTCTG CACCAGCAAC ACAGCAGCAG GTGGTCAATG CTGATGCTGG 
    GAGTGGCAAT CAGGCTCCTT TGCCACCTCC TGATGCTAAT GGTGCTGCAC 
    CGGCTGCTGC TGTCGCTCCC CAACAGTCAT CATCTGTGGA GCAAGCGTCG 
    ACTTCTAGCA CCGTGGGTGT TATAGCGGGA GGGCCAGCAC AAGGTAGGAG 
    GTCAAGAGTT TCTGAATCCA CCCCTGCAAG GAGGACAAGG AGGAGGCATC 
    AGTAGGTAAC TTAGAGTTGT TACTGTAATA GAACATATAC ACCATGTTTC 
    CTTGTAACCT TGATCATATT TAGGCTCATC CCAAAATTAT GTAGAATTGT 
    GGATGAAATC TTTTCTTTTA TTTACCTTGT ATCCACCATT TTACCTTAGG 
    CAAAGGAATA AAGATTTCGA TTTC

    Gene models with high sequence identity

    1. AT3G58030.4 [+] show detail - RING/U-box superfamily protein
      E-value: 4e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 14.142
    superfamily RING/U-box 1.8e-17
    HMMPanther RNF5 7.7e-46
    Gene3D no description 7.5e-16
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 0.0000000004
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000011

    See the detailed result >

    AT3G58030.4

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1).
    Link
    InterPro Scan - TAIR