K10133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10133

Determination of introduced cDNA(s)

  • J013028M22 - Rice Full-length cDNAs - Original: J013028M22

    full reading [+] show sequence

    Nucleotide sequence: J013028M22 - full reading
    GCCCTTCCCT CCCATCCCCC GATTCGCCAC CGCGAATCCC ACCACCACCC 
    GCAGATCTCC GCCTCGGCGC CATTGCCCAC CCTCCACGCC CCCGCCAGAT
    TCGCCCAGAT CCACAGCCGG GTGCATCCGG CGGCGTGGCT GGGGCGCCCT
    CGATCGGGAA GCTTTGATCT TCGTACCCTT TTTGCGGTGG GCGGGCGGCG
    GGCGGCGGAG GAGGAGGAGA TGGGTGTCGG CGGGGAGAAG TTCCAGCTGG
    GGACGGTGGG GGCGCTGAGC CTCTCCGTGG TGTCATCCGT CTCCATTGTC
    ATCTGCAACA AGGCGCTCAT GAGCTCCCTC GGCTTCAACT TTGCCACTAC
    CTTGACGAGT TGGCATCTTC TTGTCACATT TTGCTCCCTC CATGTAGCAT
    TATGGATGAA GTTCTTCGAG CACAAGCCTT TCGACTCGAG AACTGTCATG
    GGATTTGGAG TGCTCAATGG CATCTCCATT GGCCTCCTCA ACTTGAGTCT
    TGGTTTTAAT TCTGTTGGAT TTTACCAGAT GACAAAGCTG GCTATCATCC
    CATGCACTGT TATTTTGGAG ACTCTTTTCT TCAGGAAGAA GTTCAGCCGG
    AGTATCCAAC TGTCCCTTTC AGTGCTCCTC TTTGGTGTCG GTGTTGCAAC
    AGTGACTGAT CTGCAACTCA ATGCTGTGGG ATCCGTATTG TCCTTGCTGG
    CAATTATTAC AACCTGCATC GCGCAAATTA TGACAAACAC TATCCAGAAG
    AAGTTCAAGG TTTCTTCAAC CCAATTATTA TACCAATCTT GCCCCTATCA
    ATCACTGACC CTCTTCCTTA TTGGTCCATT CCTTGATGGA TTTTTGACTA
    ACCAAAATGT ATTTGCATTC GACTACACAT CCCAAGTTGT GTTTTTCATT
    GTATTATCGT GCTTGATATC TGTCTCAGTG AACTTCAGCA CTTTCCTTGT
    GATCGGAAAG ACTTCTCCTG TCACTTACCA AGTCCTGGGC CATCTTAAAA
    CATGCCTAGT ACTGACCTTT GGTTATGTTT TGCTTCATGA CCCATTTAGC
    TGGAGAAACA TACTCGGCAT CCTAATTGCA GTAGTTGGAA TGGTCTTATA
    CTCATACTTC TGCACATTGG AGGGCCAGCA AAAAAACGCC GAAGTCTCCC
    CACAACAGGC GAAAGAAGGC GATTCGGCTC CTTTGATCTC AGACTCTCTG
    AGCAAAGTTG AGAATGGAGG TGGAGTGGTT GATGATGAGC CTCTCAAGGT
    ACCGATGTGG AGCTCAAAGT ACTCAAGGGC GTGAAAATAC CTTCCTTTTA
    GAAGGCGGCA TTATACAGGA TTCAATTTGG TAGGCGGATA GTAGGGTTGG
    AAGCCAACCC AGATTGTAAT GAACATTCCA GTTACATTTT TGGGTTTATT
    TAACATTACT ATCTAGTATC TACTAGCAGT AAAAGGGTTC TTGGGAGGAT
    TTTACCTTCA AGATAGCAGA TCTGCCTTGA AACTTAGACA ACAGATATTG
    TATGATTGTA TCTGGATATG CTCCACATCT TTCTCACTGT AACTTCCTAT
    GGGAACATAG ATCCACAGAT AGACTTCATT CTTTTGTACC AAAGATCCAG
    AGAACTAGAG ATCTGCAAGG TTCAAGTTTG TGACTGTAAG TTTATGTTTA
    CTTTGGACCC AGTGATGGAG CTTTTGTATA TTTAGGACCA AGTGCAAAGA
    GGGGTTCTTT TCC

    Gene models with high sequence identity

    1. AT1G06890.2 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 5e-131; Score: 465.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 4e-33
    superfamily Multidrug resistance efflux transporter EmrE 0.000003
    superfamily Multidrug resistance efflux transporter EmrE 0.000041
    HMMPanther SOLUTE CARRIER FAMILY 35 4.1e-90

    See the detailed result >

    AT1G06890.2

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR