K10136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10136

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10136

Determination of introduced cDNA(s)

J033095A19 - Rice Full-length cDNAs - Original: J033095A19

full reading [+] show sequence

GACCTACTTC GAGCTGAGCC TGATCGATTC GCGAGATTTC CGTTCATGGC 
GGCGAAGTCT TTGAGGGAGA TCAGGAGAGC GGCGGCGGCG GGGATTGGGA 
GTAGGAGATG CTTCCCCGGC GACGCGGCGG CGACGGCGGC GGCGGCGGCG 
GGGGTGGCGG AGGGGAAGGT GGGAGGAGGA GCGGGGAAGG AGGTGAACCT 
GTTCACGGCC ATCAACCAGG CGCTCCACAT CGCCCTCGAC ACCGACCCGC 
GCTCTTATGT CTTCGGGGAA GATGTGGGTT TCGGTGGTGT CTTCCGCTGC 
ACAACAGGGC TCGCTGATCG GTTTGGCAGG AATAGAGTTT TCAATACGCC 
GTTGTGTGAA CAGGGAATTG CTGGATTTGC CGTTGGTCTA GCAGCAATGG 
GTAATAGAGC TATTGCTGAG ATCCAGTTCG CAGATTATAT CTTTCCAGCT 
TTTGATCAGA TTGTTAATGA AGCAGCTAAA TTTAGATACC GGAGTGGAAA 
TGAATTTAAC TGTGGAGGAT TAACGATTCG ATCACCTTAT GGCGCTGTCG 
GTCATGGTGG TCACTACCAT TCACAGTCAC CAGAGGCTTT CTTTTGTCAT 
GTTCCTGGAC TCAAGGTAAT CATACCTCGA AGTCCACGTG AAGCCAAGGG 
ATTGTTGTTG GCAAGCATTA GAGACCCAAA TCCAGTCGTA TTTTTTGAGC 
CAAAGTGGTT GTACCGTTTG GCTGTTGAAG AAGTTCCAGA GGAGGATTAT 
ATGCTGCCCT TGTCTGAGGC AGAGGTGATT CGTAAAGGAA GTGATATAAC 
ACTAATTGGT TGGGGAGCTC AACTTGCAGT ACTGGAAGAA GCATGCGAAG 
ATGCAGCAAA GGATGGAATA TCTTGTGAGC TCATAGATCT AAGAACACTG 
ATTCCATGGG ACAAAGAAAC AGTAGAGGCC TCTGTCAGCA AGACAGGAAA 
ACTTCTTGTT AGCCATGAGG CTCCAATCAC CGGAGGGTTT GGTGCAGAAA 
TTGCCGCATC CATCACCGAG CGCTGCTTCC AAAGGTTAGA AGCGCCCGTC 
GCAAGAGTAT GCGGCCTGGA CACTCCTTTC CCTCTTGTTT ATGAAACATT 
TTACATGCCC ACAAAGAACA AGGTCCTGGA CGCTATCAAA GCAACTGTAA 
ATTACTGAGG TGCTGGAGCA AGCTACCTAT GCGTTGTTCC TTGACAGTAT 
AGACAAAAAT TATGTGCACC TTATTGCTGG TTGTAGCCTG AATATGCATC 
TCCATAAAAG CATTGTATTT GATAATATAG AATTATAGAT CAATAAAGCC 
GTGAAGATGC

Gene models with high sequence identity

AT1G55510.1 [+] show detail - branched-chain alpha-keto acid decarboxylase E1 beta subunit
E-value: 1e-161; Score: 566.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Transketolase-like, pyrimidine-binding domain	2.3e-64
Gene3D	no description	3.2e-78
Gene3D	Transketolase-like, C-terminal	3.7e-40
HMMPfam	Transketolase-like, pyrimidine-binding domain	1.1e-53
HMMPfam	Transketolase, C-terminal	6.8e-35
HMMPanther	BRANCHED CHAIN ALPHA KETO ACID DEHYDROGENASE	6.4e-189
HMMPanther	DEHYDROGENASE RELATED	6.4e-189
superfamily	Thiamin diphosphate-binding fold (THDP-bindin	2.1e-71
superfamily	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	8e-46

See the detailed result >

AT1G55510.1

Model type: Protein coding
Short Description: branched-chain alpha-keto acid decarboxylase E1 beta subunit
Curator Summary: branched-chain alpha-keto acid decarboxylase E1 beta
Computational Description: branched-chain alpha-keto acid decarboxylase E1 beta subunit (BCDH BETA1); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Transketolase family protein (TAIR:AT3G13450.1); Has 16577 Blast hits to 16568 proteins in 2706 species: Archae - 211; Bacteria - 10745; Metazoa - 523; Fungi - 224; Plants - 389; Viruses - 0; Other Eukaryotes - 4485 (source: NCBI BLink).
Link: InterPro Scan - TAIR