K10145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10145

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10145

Determination of introduced cDNA(s)

  • J013114I10 - Rice Full-length cDNAs - Original: J013114I10

    full reading [+] show sequence

    Nucleotide sequence: J013114I10 - full reading
    TGCGGCTCAC ATCTGAACCA AATCGTGCTC GGTCTCCGTC TCCACCTCCG 
    CATATCATCC TCCGCTTCGC TTCCGCTCGA TCGATTCCTC CCCTCCATCA
    CCACCACTCC TCCGCCGCGT CGCCGTCGCC GTCACCGACA AGCCTCGCCT
    CTCCTCGCCG GTTCGCCGTC GCGGCCGCCT CCTTTGTCCG CTCCAGCGCC
    CTCCTCGGCC CGGATCGGCC CTTCCCCAGA TGGAGAGGGC ACTTGATTCC
    TTGACGTACA AAGGCTCCAT TCCAGACGCT ATCCTTCAGT CAAGAAGGGA
    TAACAAACTC TTTGTAGTGT ACATATCAGG TGAAGATGAG ACTTCGAGTA
    GTTTGGAACA GTCGACACTT GTTAATGAAA GTGTGGCTGA AGTGATAGGC
    AACTGTTGCG TATTCCTGCA TCTAAAACAA GGCAACGTCG ATGCATCCCA
    ATTTTCAGCT ATATATCCAC AGAAGGCTAT CCCAAGTATA TCTGTCATTG
    GACAGAATGG TGTTATGCTA TGGTGTCATG AGGGATACAT CAGCTCGAAA
    GATCTGAAAG AAAATATTGA GAAAGCTTGG GCTACCCTTC ACCTGCAGGG
    TACAGCAGCA GCCTTTCTGA CTGCATCACT TGCTTCAAGA ATGACTGAAC
    CTGTGAATAC CACCCCGACC ACTCTACCTA CTCAAGGAGG CTCATCTGCT
    GCAGAGAATC CCTCTACTTC ATCAAATCAA TCTACAGGAA CTTCTGGAGC
    CAGTGGGTTT GCTAATCCTA CTGATTCGGT GGCACAGCCA CCTAGAAGCA
    CAAGCCGTGA TGAAACTCCC AGCATAAGTG AAAAAGAATC CTCAAATTTG
    GATTCAAGTC CAGGTAATAG AACTGTTCAA GAAAGGCCAG ATTCAGATAG
    TGCGCAAGTT AAAGGTTCTT TGCCTGATCA TCCAAGGAGC TCAAATATAG
    AAGGTTGTGC AAATCCAGTT CAATCAGGCA ATACAGCATC ACTAAAACAG
    AAAAATAAAG TGGATGATGG TTTCACCAAA GTTTCCTCAG AGTCAGTTCC
    TACCAGAGTA GCTAGTAGAG GTAAATCGTC AAAGGTAGCT GTGGATCAAG
    ACAAGGCAAC AACCACTAGC ACCCCTATTG AACCTGCCCC TGTGAGGTCA
    AATGATATTC AGCTGGTCGT TCGCATTCCT GATGGACCTA GTCTGCAGAT
    TAAACTGACA AAAGATGATA ACTTAAGGAA GGTGAAGAAT TTTGTGGATG
    AAAACCGTGC TAATGGGGCT GGATCTTACG ATCTTGCTAT GCTTTATCCA
    AGAAAAGTTT TCACTGAACA AGACATGGAA GCCACGTTGC ATGAACTGGG
    TATTGAAACC CGGCAGGCTC TCACTATTGT TCCACATCAT AAAACCATTC
    GAGCAGCAAA GCGCCAATCA TCATCATCAC CCCATGAAGG GGATAACAAT
    ATGGATGCAG ACAGCTCAGG TGGTTCGGGA TATTTCGGTT ATCTGAGAAC
    TGCCCTATCG TTTGTGAATC CACTGTCCTA CTTGAGAGCA AATGCTGCTC
    CATCAAACCC TGATCAGTTG GCAAATCAGG GGTCGCCACA GTACAGACCG
    AGCACTGGAC CCTGGAATCG TCCTGGAGAG GACACTGCTT CGGAAAGCCG
    TATTCCTGAT AGTGCGAGGC AACAGGCTGC TAGGGATACT AGCTCCGGGA
    GCACCTTGAG GAGGCGGCCG AGACAATTCG GTGGCAACGT TCACAGTTTG
    AGAAGTGATG ACCAAGGCCC ATCTGATGAT AGGAATGTTT ACTGGAACGG
    GAATTCTACA GAGTTCGGAG GCGAAGATAA GAAATGAGAG CTGAGCACCG
    GCAATATCAT GGCAGAGTTA AATATATACT TGGACAAATA ACACGATCTA
    GGTAAATAAA TACAAACAAA TTTGAGATGT TAAATTCAGT GGTACCAGTA
    CCACAACATA GACTTCTAGT GTAAAATGAT AATACATCTG ATGATTGGCT
    GTGATGGTTC GTTTCCGGGA GCCGATTCTT CGTCAGTTTG GGTAGTATGG
    AGAGATATTT TCGTTTGC

    Gene models with high sequence identity

    1. AT2G43210.2 [+] show detail - Ubiquitin-like superfamily protein
      E-value: 5e-69; Score: 259.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan UBX 16.59
    HMMPanther UBX DOMAIN-CONTAINING 2 1.7e-46
    HMMPanther UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAININ 1.7e-46
    HMMPfam UBX 3.6e-13
    Gene3D no description 1e-10
    superfamily Ubiquitin-like 5.6e-16

    See the detailed result >

    AT2G43210.2

    Model type
    Protein coding
    Short Description
    Ubiquitin-like superfamily protein
    Computational Description
    Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR