K10149

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10149

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10149

Determination of introduced cDNA(s)

  • J013102G21 - Rice Full-length cDNAs - Original: J013102G21

    full reading [+] show sequence

    Nucleotide sequence: J013102G21 - full reading 
    GGGCGTGTGT AGCTACTGCT ATAAGGAGCG CGCCGTGCAC CGCCTCTCAC 
    AATGTCGACC GCCGCCGCCG CCGCCGCTGC CCAGAGCTGG TGCTTCGCCA 
    CTGTCACCCC GCGCTCCCGC GCCACAGTCG TCGCCAGCCT CGCCTCCCCA 
    TCACCGTCCT CCTCCTCCTC CTCCTCCAAC AGCAGCAACC TCCCGGCCCC 
    CTTCCGCCCC CGCCTCATCC GCGACTCCGG CGAGGAGGGG CGAGGGGCGG 
    AGCTAGCGGC GGGGGAATGG GGGGTGGAGT GGAGGAGAGG AAGGTGGTGG 
    ACTTGGAGGA CGGGGACGGG GAGGAAGGGG AGGATGCGGC GGCGGTGGCG 
    GCGGGGTCGA GCAGGGAGAC GCGGATGCTG CCGAGGATGC CGGTGCGGGT 
    GCTGCTCGCT GAGGGCGACG ACTCCACGCG CCACATCATC TGCGCGCTGC 
    TCCGCAAGTG CGGGTATCGA GTTGCCGCAG CCTCTGATGG TGTGAAAGCG 
    TGGGACATAC TAAAGGAAAA ATCTTTCAAT ATAGACCTTG TTTTAACTGA 
    AGTTGAACTT CCCTTGATGT CTGGGTTCCT GCTGCTCTCC ACGATCATGG 
    AACATGACGC ATGCAAGAAT ATCCCCGTCA TAATGATGTC TTCAAATGAT 
    TCCGTTAGCA TGGTTTTCAA ATGCATGCTA AAGGGTGCTG CAGATTTCCT 
    TGTTAAGCCA ATACGGAAGA ATGAATTAAG GAACTTATGG CAGCATGTTT 
    GGAGAAAACA ACTGTCCAGC GGTGTTCTTG ATGTGCAGCA TACTCAACAA 
    GAAGATAATC TTACAGAAAG GCATGAGCAG AAGACCGGAG TGACGAAAGC 
    TGAACATGTG ACTGAAAATG TTGTCCACAA GAACATGGAA TGCAGTGAAC 
    AAGAAAGTGA TGCTCAAAGT TCATGTACAA GGTCAGAACT GGAGGCTGAC 
    AGTAGGCAAA CCAACAATTT ACTGGAATAT AAGCAGCCAA TGGGAAGGCA 
    TTTCTCCAAG CCTGACCACA AGAACACCGA GAAAAATGGA GGGACTAAAA 
    TTCATGCATC TAATGATGGC AACTTGATTC CACGGAGGGA AGAGGATGCA 
    TCACTGAGGA GGATGACATG TTCAAATGAT ATTAATTGTG AGAAAGCTTC 
    CAGGGATATG GAGCTGGTTC ATATTATTGA CAATCAGCAG AAGAATAACA 
    CACATATGGA GATGGATGTT GCGAGAGCAA ATTCCCGTGG AAATGATGAC 
    AAGTGCTTTT CCATTCCAGC ACACCAGTTA GAACTTTCTC TCAGAAGATC 
    TGACTACAGT AGATTAGAGA GCCAGGAGAA AAATGAACGA AGAACACTGA 
    ACCACTCAAC TTCATCTCCA TTTTCCTTGT ACAACTGCAG GACAGCATCA 
    TCTACCATTA ATGCTGGTGA TGCTCAGGCA TGCAGCACCT CGGCAACACA 
    TATAGATCTT GAAAACAAAA ATGGAGATTC CAAAACTCCC TCTCAAGACA 
    AGAGGGAAAC AAACCAACCT CCCATTAGAG TTGTACCATT TCCTGTTCCT 
    GTTGGAGGAC TAACATTTGA TGGGCAGCCA TTCTGGAACG GTGCACCTGT 
    GGCATCCCTT TTCTATCCAC AATCAGCTCC TCCCATTTGG AATAGCAAAA 
    CATCTACCTG GCAAGACGCA ACCACACAAG CAATTTCTCT GCAGCAGAAT 
    GGTCCAAAAG ATACGGATAC TAAGCAGGTT GAAAATGTAG AGGAACAAAC 
    TGCTCGGAGT CATCTAAGTG CTAATCGGAA ACATCTCCGC ATTGAAATTC 
    CTACAGATGA GCCGCGGCAT GTTTCTCCAA CCACCGGTGA AAGTGGGAGC 
    AGCACTGTGC TGGACAGCGC CAGAAAAACG CTCAGTGGCA GTGTCTGTGA 
    CAGCTCTTCC AACCACATGA TTGCCCCTAC TGAATCATCA AATGTTGTTC 
    CTGAAAATCC TGATGGTTTA CGCCACCTGA GCCAACGAGA GGCTGCACTG 
    AACAAGTTCC GGCTTAAGAG GAAAGACAGG TGCTTTGAGA AGAAGGTGCG 
    ATACCAGAGC AGGAAGCTAC TAGCCGAGCA GCGACCGCGG GTTAAGGGTC 
    AGTTTGTTCG GCAAGATCAT GGTGTCCAAG GGAGCTAGGG CTGTCCAAAC 
    TTCAGGAGAT TGCTGTGCCA CGGTTATCCT GGTGGTCAGT GTCAGATTTT 
    GTTTGAAGAG TGAAAGTATG ATTGCCCTGA CCTACAGTCA GCAGTGTATG 
    GTGGTGTTGC ATATATATAC AGGCTAACTT CGTGTGCTAG GTTAGGCCAT 
    GGACCTCGTA CATTGTAGAG TTTGTCAGTA GGGATCATAT TTTGCTTCAG 
    ATCTAGATAA GCTGCGTTTA TCATGTAGCA CACGTATTTA TGTTTTCTAA 
    ATTGTATCTA GCCAACAGTT AACGTGTAAG CTGGACGTGT GTGGATGTAA 
    GGTGTCAAGG ATATCCAAAG ACAAAGTTCT TTTGTACAGT TTCTTACACT 
    GAACATCGTT GGTGTAGTTT CATACTTTCA GTAAAGCTTG TGATGCTTCC 
    GAAGG

    Gene models with high sequence identity

    1. AT5G24470.1 [+] show detail - pseudo-response regulator 5
      E-value: 5e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan Signal transduction response regulator, receiver domain 28.293
    ProfileScan CCT domain 15.378
    HMMSmart Signal transduction response regulator, receiver domain 1.4e-25
    superfamily CheY-like 2.6e-30
    HMMPanther SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) 1.4e-17
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 1.4e-17
    Gene3D no description 4.8e-26
    HMMPfam Signal transduction response regulator, receiver domain 8.9e-22
    HMMPfam CCT domain 1.9e-19

    See the detailed result >

    AT5G24470.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 5
    Curator Summary
    Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 5 (PRR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR