K10151

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10151

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10151

Determination of introduced cDNA(s)

  • J013149F15 - Rice Full-length cDNAs - Original: J013149F15

    full reading [+] show sequence

    Nucleotide sequence: J013149F15 - full reading
    GGCGCTATCC ATTCTCCTCC TCTCCCACGT CTCCTGATCC GTACCTGCTT 
    AATTCCTTCG TCTTCCTCTC CTCTTCCTTC TTCTTCCACC ATGGCTGCAA
    CCGCTTCGTC CTCCTCCACC GCCACCGCCT CGCCGCTCCT CCTCCCCTCG
    GCCCGCCGCC CGCTCCCTTC CTCCAAACCG TGGCTTCCCG ACGGCAGGGC
    GTTCAGGGGC AGCAGGGCGC TGAGTTCAGC GGCGCGGCGA TGCTTCTGCT
    GCTGCTGCAG GTGCGAGGCC GCCGGTGAGG CGGGAACGGC GCCGCCGCCG
    CAGCAGCGCG GAGTGGATGA CGGCGGCGTG GTCTGTACCA GCGCCACCCG
    GTCCCGGAGG AGGAGCGTTC TTGGAGTCGC CGTGGGGGTA TCGTCGGCGC
    TGGCGCTCGG CCTGGCCGCG TTCGATGATG CCCTCGCCGC CGGGCTGCCT
    CCCGAGGAGA AGCCCAAGCT CTGCGACGCC GCCTGCGAGA AGGACCTCGA
    AAATGTGCCC ATGGTGACTA CAGAGTCTGG TCTTCAGTAC AAGGATATCA
    AAGTGGGTGA AGGCCCAAGT CCACCCATTG GCTTCCAGGT TGCTGCAAAT
    TATGTTGCCA TGGTACCGAA TGGACAGATA TTTGACAGTT CTCTGGAAAA
    GGGGCAGCCC TACATATTCC GTGTTGGTTC AGGACAGGTG ATAAAGGGAC
    TTGATGAAGG GATATTGTCA ATGAAGGTTG GAGGACTACG GCGATTATAC
    ATACCTGGCC CGCTAGCATT TCCGAAGGGC CTTACTTCAG CTCCTGGAAG
    GCAAGAGTGG CTCCAAGCAG CCCAGTTATG TTCGACGTCA ACTTATTGTA
    CATACCAGGT CTTGATGATG AGTGAAAGCA TGCATAGGAA TATATATATA
    TATACATCCT CTTCTGGTTT TCCACATCTT TTACAAGAAG GATGATGAAG
    CAAATGATTT ACCATACAGT ATATCGATCT AGAGGGACCA TTAATTCTTT
    TCGGCTGTAG ATTGTGGGCA AGTATGTTAT GTGTTGAGTA CAAAATTTTA
    TTATTAGACT GCTTTAAGTA GCATGTAAAG ACTTTTGTAG CTCTCATTTT
    TCTTAATGAA ATTGGGGGAG CTCTGCTTCC TAGTTT

    Gene models with high sequence identity

    1. AT2G43560.1 [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 4e-58; Score: 222.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.2e-24
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 16.977
    HMMPanther FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1.1e-44
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 1.1e-44
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 2e-17
    superfamily FKBP-like 7.3e-27

    See the detailed result >

    AT2G43560.1

    Model type
    Protein coding
    Short Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 8823 Blast hits to 8572 proteins in 1646 species: Archae - 42; Bacteria - 4685; Metazoa - 1489; Fungi - 464; Plants - 749; Viruses - 0; Other Eukaryotes - 1394 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR