K10211

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10211

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10211

Determination of introduced cDNA(s)

  • J013083K07 - Rice Full-length cDNAs - Original: J013083K07

    full reading [+] show sequence

    Nucleotide sequence: J013083K07 - full reading 
    TGGAGGCAGA AAGCAAGCAA AAGGATAGGA AGGAGCCAAG AACACCAAGA 
    ACTTGTTGGA GCTGAGACAG CAGCACCAAG CAAGAAACCG GATCCAATCC 
    ATCCATCCAT CCATAGTTTC CAATGGCTGG CAAGTACATC GCCGCTGGTC 
    TTGTTGGTTC CTTTGCCATC TCATATGTTT GTGATCATTT TATCGCTGAG 
    AAGAAGATAT TTGGAGGCAC CACACCACAT ACCGTGTCCG ACAAGGAATG 
    GTGGCAAGCA ACTGACAAGA AGTTTCAAGC CTGGCCTCGC ACTGCTGGGC 
    CACCGGTTGT CATGAACCCC ATCAGTCGCC AGAACTTCAT CGTCAAGGAT 
    CTCGAGTCCT AAGGTAATTG TAGTGGGAGC ATATATGCTG AAGGTTGCGC 
    CGTGACTAAG ATGGCGATGG CTGTGGCTAC AAACTACCTA CCTATGCCGT 
    ACTCCCGAAC CAGTACGTGA GTACTTGGTC TCAATAAAAC AGAACTATTT 
    TGCCTAGTGC AGCCTGAACA GAACCTGAAG CATATCTGCT TTAGACATTG 
    TCATCTTGGT GATTGTTCTT ATGCAGTAAC AACCTCTACT TTGTGCTTGT 
    GCTATTGTGA GTGAATGGAA CTATCTGTCT GTCACACTGG

    Gene models with high sequence identity

    1. AT1G01170.2 [+] show detail - Protein of unknown function (DUF1138)
      E-value: 9e-29; Score: 123.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G01170.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1138)
    Computational Description
    Protein of unknown function (DUF1138); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR