K10221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10221

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10221

Determination of introduced cDNA(s)

  • J013055G04 - Rice Full-length cDNAs - Original: J013055G04

    full reading [+] show sequence

    Nucleotide sequence: J013055G04 - full reading 
    GGCTCAGCCC CAGTACTTGA GCCTCTCTTC CTTCCCCTTC CTCTTCCCAT 
    CGCGATACCT CCTCCTTCCC GTCGAACCCT CTCCAGTCTC CACTCCACTG 
    AATCCTCCCA CCTCGGCTCG AAGGAATGGC AAGCGGTAGT GAAGCTGAGA 
    AGTCACCTGA GGTTGTGCTG GAGTGGCCTA AGAAGGACAA GAAGAGGCTT 
    CTACATGCTG TTTACCGTGT TGGAGATTTG GATCGCACCA TTAAATGTTA 
    CACAGAATGC TTTGGAATGA AATTACTGAG GAAAAGAGAT GTGCCTGAAG 
    AGAAATATAC GAATGCATTT CTTGGGTTTG GACCTGAGGA CACCAACTTT 
    GCACTTGAAT TGACATACAA TTATGGTGTT GATAAGTACG ACATTGGAGC 
    AGGATTTGGG CATTTCGCTA TTGCAACTGA GGACGTGTAC AAATTGGCTG 
    AGAAAATTAA ATCCAGTTGT TGCTGCAAGA TCACTCGTGA ACCTGGTCCT 
    GTCAAGGGAG GATCCACTGT GATTGCCTTT GCACAGGATC CTGACGGTTA 
    CATGTTTGAG CTTATCCAGA GGGGTCCAAC ACCTGAGCCT CTTTGCCAAG 
    TTATGCTTCG TGTGGGTGAC CTTGATCGCT CCATCAAGTT CTACGAGAAG 
    GCCCTTGGTA TGAAGCTGCT GAGGAAGAAG GATGTACCTG ACTATAAGTA 
    TACCATTGCC ATGTTGGGCT ATGCTGATGA GGATAAGACA ACTGTTATTG 
    AGTTGACATA CAACTATGGT GTCACAGAAT ATACCAAGGG CAACGCATAT 
    GCTCAGGTTG CTATTGGCAC TGAAGATGTC TACAAGAGTG CTGAGGCTGT 
    TGAGTTGGTT ACAAAAGAAC TAGGGGGAAA GATTTTGCGG CAGCCAGGTC 
    CACTACCAGG GCTCAACACA AAGATTGCCT CTTTCCTTGA CCCTGATGGC 
    TGGAAAGTGG TTTTGGTTGA TAACGCCGAC TTCCTGAAGG AACTCCAGTG 
    AAGATGAGAG ATGGCCCAAG TTCTGTGCTA GGAGGCAAAG CACAAACCTT 
    ATGTAGTAAT GCCAGTGCAA TGTAATAAAG AAGCGGTTTC CGCTCTATGA 
    ACAAGAATAA ATTCTGGCAC ATGCGTTGTG CTTATGCTAG TACTGTCTGG 
    GTTTGGCTGT AAATCCGCTA TGCATTGCTA CCTGTATCAG CATGACTGTT 
    GGAGTGTTGT TGATAACAAG GACCAGTTTG TGCAGTTGAG CTGAGTTTCC 
    TGAT

    Gene models with high sequence identity

    1. AT1G11840.6 [+] show detail - glyoxalase I homolog
      E-value: 1e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) 1.7e-80
    superfamily Glyoxalase/Bleomycin resistance protein/Dihyd 1.4e-44
    HMMTigr Glyoxalase I 9.3e-84
    HMMTigr Glyoxalase I 3e-45
    Gene3D no description 1.4e-38
    Gene3D no description 7.8e-35
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 1.2e-19
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 1.9e-13
    PatternScan Glyoxalase I, conserved site 0

    See the detailed result >

    AT1G11840.6

    Model type
    Protein coding
    Short Description
    glyoxalase I homolog
    Curator Summary
    Encodes a glyoxalase I homolog ATGLX1.
    Computational Description
    glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1).
    Link
    InterPro Scan - TAIR