K10222

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10222

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10222

Determination of introduced cDNA(s)

  • J013053F13 - Rice Full-length cDNAs - Original: J013053F13

    full reading [+] show sequence

    Nucleotide sequence: J013053F13 - full reading 
    TCCCTCCTCT CTCGCTCTCT CTCTCTCTCT TCCCCTTCCG GCTTCCGCCT 
    CCGCGCCTCG ACGACCAGGG TAGCTCGGCC GGCGACTCCG CGAGCGGCGG 
    GGAGGGAGCT GGAGCATCAT CGCACGTGAC TGGAGAGGGA GGACCCCCCC 
    CCCCCCCCCC CGAAGATTTG ATTCGAGATG AATGCTCCCG ACCGCTACGA 
    ACGCTTTGTG GTGCCTGAGG GAACCAAGAA GGTATCATAT GAGCGGGATA 
    CAAAGATTGT GAATGCTGGG TCATTCACAA TTGAGCGTGA GGACCACACC 
    ATTGGCAACA TCCTCCGCAT GCAGCTCCAC AGGGACCCAA ACGTCCTCTT 
    TGCTGGTTAT AAGCTCCCTC ATCCCCTTCA GTACAAGATC CTTGTCAGGG 
    TCCATACTGC AAACCAGTCC ACCCCTACTC AAGCGTACAC ACAGGCAATC 
    AATGATTTAG ACAAGGAGCT TGAGAATCTC AAGCAAGCTT TTGAGGATGA 
    GAAGATCCGC TACGAGGAAA GGCCTAAGCA GGGATACTAG GCCAACACTC 
    CTTAAAATGC AGAACCTCTG TTGATGTTAG ATCTGATGCC TGAGCATTAG 
    TAGAAAAAAA AATGCTACTA TGCTGATCAA TGAACTCTTT TAAGAAACTT 
    GTTTATGCTT AAACTCGTAC AACGCAGTTC ATCCTGATGC ATTTCTGTTG 
    TCTGTGCTTG GAGCATGCTC TATTAAGACT TGTCATCTCT GAACTGCCAT 
    TGCATGAAAA ACATTAAAAT TGAAGTGCTA CACATCG

    Gene models with high sequence identity

    1. AT3G52090.1 [+] show detail - DNA-directed RNA polymerase, RBP11-like
      E-value: 4e-48; Score: 188.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site 0
    HMMPanther DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYP 1.3e-47
    HMMPanther DNA-DIRECTED RNA POLYMERASE I,II,III 1.3e-47
    HMMPfam DNA-directed RNA polymerase, dimerisation 1.1e-06
    superfamily DNA-directed RNA polymerase, RBP11-like 2.3e-33
    Gene3D no description 5.8e-35
    Coil coiled-coil 0

    See the detailed result >

    AT3G52090.1

    Model type
    Protein coding
    Short Description
    DNA-directed RNA polymerase, RBP11-like
    Curator Summary
    Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.
    Computational Description
    NRPB11; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, holoenzyme, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNApolymerase 14 kDa subunit (TAIR:AT2G29540.2); Has 990 Blast hits to 990 proteins in 256 species: Archae - 62; Bacteria - 0; Metazoa - 336; Fungi - 323; Plants - 106; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR