K10229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10229

Determination of introduced cDNA(s)

  • J023050D23 - Rice Full-length cDNAs - Original: J023050D23

    full reading [+] show sequence

    Nucleotide sequence: J023050D23 - full reading 
    GATGCTGCTC TGGAACTACA AGAGAGGTAG CAGCAATGGC GGCTGAGGTG 
    GAGGAGGGGA GGACGGGTAT CCCGTCTCTG CTCTCCTCCG CCGTGGGGGA 
    GGAGACCATC GCCTCCAACA TCGCCCAGCT GATAGGCTGG ACGCCACTGA 
    TTGAGATGAA GAACATCCCC AAGAAAGAAG GCATCCAAAC TCGTTTGATC 
    GGGAAGATGG AAACATACCA ACCCCTGTTC TCGGTCAAGG ACAGAACTGC 
    TCTCAGTATG ATTGAAGATG CAGAGGAGAA AGGCCTCATT ACTCCCGGTG 
    TTACGACACT GATTGAACCA ACCAGTGGCA ATCTTGGTAT CGGTTTGGTA 
    TTGGTTGCTA TTCAGAAAGG CTACAGGTTT ATTGCTGTTA TGCCCGCTAG 
    ATATTCACCT GACAAGCAGA TGCTATTGAG GTTTTTGGGT GCTGAACTGA 
    TATTAACAGA TCCTGCAGGT GGGTACAAGG GTGCGATGGA CAAAGTGGAA 
    GATCTCATGA AGATCATGCC TAATTATCAT TGTTTTAATC AAGCAACCAA 
    CCCAGCAAAT CCAGAGGCAC ATTTCAAATG GACTGGACCT GAAATTTGGA 
    AGGACACAGC CGGCAAAGTT GATTTCTTTG TAACCGCAGC TGGAACAGGA 
    GGCACATTGT CAGGTGTAGG AAGGTACCTG AAGATCAAAA ATCCATCTAT 
    AAATATAGTG TGCGTGGAAC CTTCAGAAAG TGCTGTAATT TCAGGTGGTT 
    CACCAGGATC ACACAAGATT CAAGGCACTG GGCCAGGTTT CATACCGAAA 
    ACTTTGGACA GGTCCATCAT CGATGAAGTT GTGACCGTAA GCTCAGAGGA 
    ATCCATGGCA ATGGCAAGAA GGCTTGCAAA GGAAGAGGGG CTTCTTGTTG 
    GCATATCTTC TGGTGCAAAT GTAGCTGCTT GCATCAAGAT TGCAGCTAGA 
    GAGGAGAACA AGGGTAAGAT GATTGTTACG ATGTTCCCGA GTGGTGGTGA 
    AAGATACATG AGCTCTGATC TCTTTGCAGA TGTAAGGGAG GAATGTGCTA 
    ATATGACCTT CTAATGTCTT GGTGCAGCTC TCCTTTGCTG TACTGCAAAG 
    AGATTTGCTT CAGAATTCAG ACCACACGCT CCATTTTGCT ATGTTTTTCT 
    TCTCCTTTCC TGTTTTGAGA ACAAAAAAAA TGCCATATTA TTTCAGAAAT 
    CGATCCCGTA GATTATGAAA TTGGAAGCTC AAGAGTGCTA ATGCATCCAG 
    GATCTTGATG TTGGGCGAGA ACATCATTCC TGTGATTTTG GGCACCGAAT 
    AGTACAAGAA AGCCATAGTG TCTTTTGGAG ATCCAATACT CCTGCAGTAT 
    TGCTGGGCTG GGCAAAGCTT TACAATTCTA AGCTTGATGC ATTGTTGTTT 
    TAGTTATCTC TGAATTATTG GTATGTTGCC AGTCGGCATG TTCATTATTT 
    TGGGCTTCAA TCACTTTTGC AATTTTCTTG ATAAGAGTTA ATTGACTTTT 
    TCATTATTTA TTATAGAGG

    Gene models with high sequence identity

    1. AT3G59760.3 [+] show detail - O-acetylserine (thiol) lyase isoform C
      E-value: 7e-99; Score: 358.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYSTEINE SYNTHASE 3.4e-133
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 3.4e-133
    Gene3D no description 2.5e-64
    superfamily Pyridoxal phosphate-dependent enzyme, beta subunit 1.1e-87
    HMMTigr Cysteine synthase K/M 8.8e-149
    HMMTigr Cysteine synthase A 4.4e-151
    HMMPfam Pyridoxal phosphate-dependent enzyme, beta subunit 3.5e-55

    See the detailed result >

    AT3G59760.3

    Model type
    Protein coding
    Short Description
    O-acetylserine (thiol) lyase isoform C
    Curator Summary
    Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC
    Computational Description
    O-acetylserine (thiol) lyase isoform C (OASC); FUNCTIONS IN: protein binding, cysteine synthase activity, zinc ion binding, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase B (TAIR:AT2G43750.2); Has 22643 Blast hits to 22626 proteins in 2678 species: Archae - 432; Bacteria - 15847; Metazoa - 414; Fungi - 670; Plants - 570; Viruses - 2; Other Eukaryotes - 4708 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR