K10232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10232

Determination of introduced cDNA(s)

  • J013054P13 - Rice Full-length cDNAs - Original: J013054P13

    full reading [+] show sequence

    Nucleotide sequence: J013054P13 - full reading 
    GGGCGAAAAA AACCTGTTCA TCATCAGCTC GAGTGTTCAA CGACCTTTGC 
    CCTCCATCCC AAAATCTCAC CGGCACCAGC AAAGGCAGCC ATGGATCCAG 
    CCACCACCGA GCTGCGGTTC GACACGCCGC TCCTCCGCAT CTACAACGAC 
    GGCCGCGTGG AGCGCCTCTT CGGCACGGAA ACCACACCGG CGGGCTTCGA 
    CGGCGCCACC GGGGTCACCT CCAAGGACGT CGTCATCGAC GACGCCACCG 
    GCGTCTCTGC CCGCCTCTAC ATCCCCGACC TCCCCGCCTC CGGCCCCGGT 
    CATCACCGCA AGAAGCTACC CATCGTCGTC TACTTCCACG GCGGCGGCAT 
    GGTCCTCGAC TCGGCCGCCT CCCCGACGTA CCACAGGTAC CTCAACTCCC 
    TCGTCTCCAA GGCCGGCGCC CTCGCCGTGT CCGTCAACTA CCGGCTTGCC 
    CCGGAGCACC CGCTTCCGGC GGCGTACGAC GACGCCTGGG CCGCACTCAG 
    CTGGACCGCG TCAGCTGCCG ACCCATGGCT GTCGGAGCAC GGTGACGTCG 
    GCCGTGTCTT CTTGGCCGGT GACAGCGGCG GCGCCAACGT CGTCCACAAC 
    GTAGCAATCA TGGCCGGCGC CGGCCAATCT AGCCTACCCC CAGGAGCAAC 
    AGTGGAAGGT GTGATCATAC TGCATCCCAT GTTTTCCGGC GAGGAGCCGA 
    TCGACGGCGA GAACGCGGAG ACGAGGGAGC TGACGGAGAA GCTCTGGCCC 
    CTGATATGTG CAGACGCAGA GGCTGGGCTC GATGACCCGA GGCTGAACCC 
    CATGGCAGAA GGAGCTCCGA GCTTGCAGAA GCTGGGATGC CGGAAGCTGC 
    TCGTCTGCTC GGCCGAGAGC GACATTGTGC TGGCGAGGGC GGCGGCGTAC 
    TACCAGGCAG TGATGGCGAG CGGGTGGCCC GGCATGGCTG AGTGGCTGGA 
    GTCCAAGGGA GAGGAGCACG TGTTCTTCCT CAACAAGCCG GATTGCGAGG 
    AGTCTGTGGC GCTCATGGAC AGGGTAGTCG CCTTCCTCGC GGGTAATTGA 
    TGAAAGGGAT CGGATGAAAT CAAAACTGTT CTTGCTTATC GCAAGCACAT 
    AAATTTGATC GTGAATAATG GGAGATTGGG GGGAGAAAGG GATGGGATTT 
    TCCTCTTGTT CTCTGCAACC ACTAGTTCAA GAAAGATGCG CTAAATCGGA 
    TCAAGTTCAG GCTTTGTTAG CTGTGGTTGT TAAGCTCTAA GATGAAATTC 
    ATGAGGTGTT TAATAGAAGG TGAAACTGAA AGCGTGTACT GGGTATGATG 
    ATTTATTGTG AGGT

    Gene models with high sequence identity

    1. AT1G47480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 2e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 2.6e-52
    HMMPfam Abhydrolase_3 1.2e-44
    Gene3D no description 3e-60
    HMMPanther CARBOXYLESTERASE-RELATED 2.6e-94
    HMMPanther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES 2.6e-94

    See the detailed result >

    AT1G47480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 13 (TAIR:AT3G48700.1); Has 8596 Blast hits to 8578 proteins in 1414 species: Archae - 104; Bacteria - 4918; Metazoa - 486; Fungi - 808; Plants - 1365; Viruses - 3; Other Eukaryotes - 912 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR