K10306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10306

Determination of introduced cDNA(s)

  • J033044P19 - Rice Full-length cDNAs - Original: J033044P19

    full reading [+] show sequence

    Nucleotide sequence: J033044P19 - full reading 
    GTGCACACAC GATCGAGAAA CACAATTGAC AGTACAGAAT TTGTAAGTTG 
    TTGATTTGCG CCATGAGAAG GCTTCTCCCG CTCGCCGGCG CCACGCTGCT 
    GATCGCGGCG GCCGGCGGCG CCAGCGGGCA GCAGGCGGGT GTTGGGTCGA 
    TCATCACGCG GGCGATGTTC GAGTCGATGC TGAGCCACCG TGGGGACCAA 
    GGTTGCCAGG GCGCCTTCTA CACCTACGAC GCGTTCATCA AGGCCGCCGG 
    AGATTTCCCT AGATTCGGCA CGACCGGCAA CGACGAAACG CGCCGGCGCG 
    AGCTCGCCGC TTTCTTTGGC CAGACCTCCC ACGAAACTAC AGGTGGATGG 
    GCAACTGCTC CTGATGGACC CTTTGCTTGG GGATACTGCC GGGTGAACGA 
    GATCACGCCG TCGGACCCGC CCTACTACGG CCGAGGACCC ATACAGCTTA 
    CTCATAAGTA CAACTACCAG CTAGCCGGGG ACGCGTTGGG TCTGGACCTG 
    GTGAACAACC CCGACCTGGT GTCAAGCGAC CCCGTGGTGG CGTTCAGGAC 
    GGCCATCTGG TTCTGGATGA CGGCGCAGTC ACCCAAGCCG TCGTGCCACG 
    ACGTAATCAC CAACCAGTGG ACGCCGTCCG GCGATGACCG TAGCTCCGGG 
    AGGCTCCCCG GCTACGGCAT GGCCACCAAC ATCATCAACG GCGGTGAAGA 
    GTGCGGCAAG GGCTACTCCA CCGACAACGC CAAGGACCGG GTCGGCTACT 
    ACAAGAGGTA CTGCGACATG TTCCGCGTAG GATACGGAGA TAACATAGCC 
    TGCAGGGACC AGAAGCCCTA CGGAGGAGGT TAAGCACTGG AGACGATCGA 
    CTGGGAGTAC GTCGTCATAA GCGGATTCTC CTAGTGCTAG TACAGCTGCT 
    GGTTGCTTGC TAATGGCTAG CTTAGCCTTC GCGTACATAC GTATATGTAC 
    GTGATACTAG TACGAATAAA GCTAGCAGAG AGCGTTCGCG GATATCATGT 
    AACAGATATG AGTATATGAC ACATGGTCGC TTATCTCACA TGTTATTGTG 
    AAATAATATT ATTACTGGTG GAACGATGCC CCTAGTTAAA CTGATCG

    Gene models with high sequence identity

    1. AT3G12500.1 [+] show detail - basic chitinase
      E-value: 4e-80; Score: 295.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Lysozyme-like 1.3e-99
    HMMPfam Glycoside hydrolase, family 19, catalytic 5.5e-98
    HMMPIR Glycoside hydrolase, family 19 1.2e-131
    Gene3D no description 2.5e-78
    PatternScan Glycoside hydrolase, family 19, catalytic 0
    HMMPanther gb def: Chitinase (Fragment) 1e-101
    HMMPanther Glycoside hydrolase, family 19, catalytic 1e-101

    See the detailed result >

    AT3G12500.1

    Model type
    Protein coding
    Short Description
    basic chitinase
    Curator Summary
    encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
    Computational Description
    basic chitinase (HCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2944 Blast hits to 2653 proteins in 549 species: Archae - 0; Bacteria - 615; Metazoa - 38; Fungi - 228; Plants - 1922; Viruses - 10; Other Eukaryotes - 131 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR