K10312

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10312

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10312

Determination of introduced cDNA(s)

  • J023121K24 - Rice Full-length cDNAs - Original: J023121K24

    full reading [+] show sequence

    Nucleotide sequence: J023121K24 - full reading 
    GCGAGGAGGA CACGCACGTT GCCACCACAG GCTACGCAAA ATTCTCTCCC 
    TTCCTCCTCC ACCACCTCCA CTCCGACGAT CCTCCTCCTG ATCCTGTGCC 
    GGCCGGCGAT GGCGTACCGG TTGCTGGAGC TCACGCTGGT CTCCGCGAGC 
    GACCTCAAGA AGGTCACTCT CTTCTCGCGC ATGCATGTCT ACGCCGTCGC 
    CTCCATCTCC GGGAGCAACG TCCCCATGCC CATGCACGGC ACCCACGCCG 
    ACCGCAACGG CGGCAGCAAC CCCGCGTGGA ACACCGTGCT CCACTTCCCC 
    GTCCCCGCCC GCTTCGACAC CCGCGGCCTC GCCCTCCACG TCCAGCTCCG 
    CGCCCGGCGC TCCTTCGGCG GCCACCGCGA CGTCGGGGAC GTGTTCGTGC 
    CCCTCGACGA CCTCCTCGCC GGCGCGCACG ACGGCGGCGA GCCGAGGCCG 
    GCTAGCTACC AGGTGCGCCG CCCCATGTCC GCCCGCGCGC ACGGCACGCT 
    CTACTTCTGC TACAGGTTCA CCGACGTCAA GCATCCCGCC CTCGAAGCCA 
    TCGAGGCCGC GACCGCGACC GCGACGAGCA GCGCCACCAA ACAAGGGCAG 
    TACGTGCCCA TGTACGCGCA GGACTCTGAT GAGAAGGCGA CGGAGAAGAG 
    CGTGTCGTCG CCGGTCACCG CCTACCCGCC GCCGTCGAAC GCCGTGGTAG 
    CGCACCCGCC GGTCGTGCCG TACGGCGCGC CGTACGGAGG AGGGTACCCA 
    CCGCATCAGC AGCAGTACGG TTACGCGGGT CAGCCGCCGT ACGCGTACAA 
    CGCCGGCCCA CCGCCGCCGG CGACGTACAG CTACGCGGCG GCACAACAGC 
    CGGCGGCGAG GAAAGGTGGA CGAATGGGCA TGGGCCTCGG ACTCGGGCTC 
    CTCGGCGGCG CGGTCGGCGG GATGATGCTC GGGGAAATGG TCGGCGACAT 
    GGAGGCTGAC GCCGCCTACG ACGCCGGGTT CAACGACGCA CTGGAATTTT 
    AGGTCTTTTG TCGTGTTTTC CTGTGTACAT GGGCAATGCA CCTGTATAAA 
    TTTGTCACGT GCATAAGAAA TTTCACGATC CAACAATGGG AAACGCGATG 
    TCAGGCCACA AGGGTAAGCA GATCCTAAAT CAACGCTATA TATATATATA 
    TATCATCCAG TACGT

    Gene models with high sequence identity

    1. AT3G16510.1 [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
      E-value: 2e-14; Score: 77.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily C2 calcium/lipid-binding domain, CaLB 3.7e-16
    HMMPfam C2 calcium-dependent membrane targeting 1e-06
    Gene3D no description 6e-07
    HMMSmart C2 calcium-dependent membrane targeting 8.8e-06
    FPrintScan PRICHEXTENSN 3e-09
    FPrintScan PRICHEXTENSN 3e-09
    FPrintScan PRICHEXTENSN 3e-09
    FPrintScan PRICHEXTENSN 3e-09

    See the detailed result >

    AT3G16510.1

    Model type
    Protein coding
    Short Description
    Calcium-dependent lipid-binding (CaLB domain) family protein
    Computational Description
    Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT4G15755.1); Has 24270 Blast hits to 15902 proteins in 854 species: Archae - 8; Bacteria - 1639; Metazoa - 9119; Fungi - 5377; Plants - 5202; Viruses - 451; Other Eukaryotes - 2474 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR