K10315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10315

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10315

Determination of introduced cDNA(s)

  • J033069H18 - Rice Full-length cDNAs - Original: J033069H18

    full reading [+] show sequence

    Nucleotide sequence: J033069H18 - full reading 
    GGGGGAAGAG AACCGAAGCA CAAACCCTAG CGGCGGCGCA GCTCAGCCGG 
    GGTTTGCGGA GGAAGGGGAG GGGCACCGCC CGCGATGCTC GCGGCGTCGG 
    CTCGGCGGGT GGCGGCCGCC GCCGCCGCGT CGTCCTCCCA TTCCAGGCTC 
    GCCAACCAGC TCGCCCACGC GCTGAATCCG CAGAGGTGGA TCCATGACCG 
    GAACAAGAAG GCGATGGAGT TGGTGGCCAA GGGGTGGAGC GCCCTGCAGG 
    AGGTTGATCG CGTCATCGAC TACGCCGACC GCAACGACAA GCGCCTGATC 
    CCACTTCTCA GGGGTGCAAA GGAAAATTTT GAGCTGGCTC TGGAGATCGA 
    CAATATGAAC ACTCATGCGA GATTATGGCT TGCCAAGATG CATTTCAAGT 
    ATCATGTTCC TGGAGCTTGT AAGGCCATTG GTGCTGCTCT GTTGGTTGAA 
    GCTGCAAACA TGGGTGATCC AGATGCACAG TATGAACTTG GATGCCATTT 
    GAGAATTGAG AATGACTACG TTCACTCTGA CCAACAGGCT TTTTATTACA 
    TTGAGAAAGC TGTTGACCAG TTGCACCCTG GTGCTTTGTA TCTTCTAGGT 
    GCTGTATATT TAACTGGAGA CTGTGTTAAG AGGGATATAG CTTCAGCAAT 
    GTGGTGTTTC CACAGAGCAT CAGAAAAGGG ACACTCTGGA GCTGCAATTG 
    CATATGGATC ACTTCTATTA AAAGGTGCTG AAGTGCCTGA GGTTATTACC 
    AGGTTCAACT CAGGTAAGAG TCCATCAACT GGAAAGATGC GAAAAAGGCC 
    CATACAGCAG GATCCAGTGA AGCTAGCAAA GGAGCAGTTT CAAATTGCAG 
    CTGAAGCTGG ATGTGATCTC GGTTTGCGAT GGCTGAAGAG GCTTGGGGAT 
    TATGAAAAGC AGCAAGAACA ACCAAAGCAA ATCCAGCAAT GACCACCTTC 
    GAAATGATTT GCTTCACTTC GGCATTGCTC TATGTTGACA TGCGTTTGTC 
    ATACACACTA TACAGGTAGA ACGTCAGATT CTCAACTGTA ATCATGTAAT 
    TGAATCCAAG CACTATGTAA ATTTTGATAT CTGGCCCAAC TCCTTGAAAA 
    GGTAGACTTG AGTTGATCCC CTTTCTCTAC AAAGGATTTT TATCGTACCA 
    GTCCTTATAG AGTTCGTTAC TTTGTTTTTT CACTTTTTCT CCCCAACTGT 
    CTACTGGTAT AACCTGTTAC ATGTCCCTTA ATTATTCCCC GGTGTGTCAG 
    AAAAGTGTTT AAATTCAAGC ATACATGAAA AAACTGGACT TTTTCCGTT

    Gene models with high sequence identity

    1. AT2G25570.3 [+] show detail - binding
      E-value: 3e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tetratricopeptide-like helical 3.9e-24
    HMMSmart Sel1-like 9.9
    HMMSmart Sel1-like 1e-06
    superfamily HCP-like 8.6e-15
    HMMPfam Sel1-like 0.012
    HMMPfam Sel1-like 3.6e-05
    HMMPfam Sel1-like 50
    HMMPanther SEL-1-LIKE PROTEIN, SEL-1L 4e-11
    HMMPanther SEL-1-LIKE PROTEIN 4e-11

    See the detailed result >

    AT2G25570.3

    Model type
    Protein coding
    Short Description
    binding
    Computational Description
    binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR