K10336

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10336

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10336

Determination of introduced cDNA(s)

  • J013002E02 - Rice Full-length cDNAs - Original: J013002E02

    full reading [+] show sequence

    Nucleotide sequence: J013002E02 - full reading 
    GTCACCCAGC CAGCTCGAGC GAGCGAAGCC AGCAGCAGAA GCAGTAGAGA 
    GAAAGTAGAG AGATGGAGGG GAAGGAGGAG AATGTCCGGC TGGGAGCCAA 
    CAAGTTCTCG GAGAGGCAGC CGATCGGCAC GGCGGCGCAG GGCTCCGACG 
    ACAAGGACTA CAAGGAGCCG CCGCCGGCGC CGCTGTTCGA GCCAGGGGAG 
    CTCAAGTCGT GGTCCTTCTA CCGCGCAGGG ATCGCCGAGT TCATGGCCAC 
    CTTCCTCTTC CTTTACATCA CCGTCCTCAC CGTCATGGGG GTCAACAACT 
    CCACCTCCAA GTGCGCCACC GTCGGCATCC AGGGCATCGC CTGGTCCTTC 
    GGCGGCATGA TCTTCGCCCT CGTCTACTGC ACCGCCGGCA TCTCCGGCGG 
    CCACATCAAC CCGGCCGTCA CCTTCGGCCT CTTCCTCGCC AGGAAGCTGT 
    CCCTCACCAG GGCCCTCTTC TACATGGTGA TGCAGTGCCT CGGCGCCATC 
    TGTGGCGCCG GCGTCGTCAA GGGCTTCCAG AAGGGCCTGT ACGAGACCAC 
    CGGCGGCGGC GCCAACGTCG TCGCGCCCGG CTACACCAAG GGCGACGGCC 
    TCGGCGCCGA GATCGTCGGC ACCTTCATCC TCGTCTACAC CGTCTTCTCC 
    GCCACCGACG CCAAGAGGAA CGCCAGGGAC TCCCACGTTC CGATCCTTGC 
    CCCACTGCCA ATCGGGTTTG CGGTGTTCTT GGTTCACCTG GCCACCATCC 
    CCATCACCGG CACCGGCATC AACCCAGCGA GGAGCCTTGG CGCTGCCATC 
    ATCTACAACA GGGGCCATGC CTGGGATGAC CATTGGATCT TCTGGGTTGG 
    CCCCTTCATT GGCGCTGCCC TTGCTGCCAT CTACCACCAG GTGGTCATCA 
    GGGCAATTCC ATTCAAGAGC AGGTCGTAAC CTGCATCAGC TATTATCACT 
    GTCAAGATGC CAATCCAGAG CAAGCTGTTT CTGATGGGCG CGGCTGTTTC 
    CCGCTGCCTG CTTTGTTAGT AATTATTGTG GAGTCGACGT TCCTCTTCAA 
    GTTTGTTGTA CTACTGTTTT TATCTGAACA CAGACTTGTA ATTTCAGTAC 
    TCAGTTGTGT ATCCCTCTTT TACTATGTGC AAATTAAGCT ATCCTCCTCC 
    TATTGGAGTT CGGTTCG

    Gene models with high sequence identity

    1. AT4G23400.1 [+] show detail - plasma membrane intrinsic protein 1;5
      E-value: 5e-150; Score: 527.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AQUAPORIN-RELATED 3.9e-200
    HMMPanther Major intrinsic protein 3.9e-200
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    HMMPfam Major intrinsic protein 3.1e-86
    Gene3D Major intrinsic protein 2e-63
    HMMTigr Aquaporin 9.5e-98
    PatternScan Major intrinsic protein, conserved site 0
    superfamily Major intrinsic protein 1.3e-61

    See the detailed result >

    AT4G23400.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1;5
    Computational Description
    plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR