K10343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10343

Determination of introduced cDNA(s)

  • J033044A03 - Rice Full-length cDNAs - Original: J033044A03

    full reading [+] show sequence

    Nucleotide sequence: J033044A03 - full reading 
    GTCCAGCCCA AATTCCCCTC ACTCCCACAC TCCACTGTCC ACTCCAAGCT 
    CACCCGAGCT CCAGCTACTC AGCTCCTCGT CGCCGTCTCG CCGCCGCCGC 
    AATGCCGCCC CTCATCCTGG TAATGGCGGC GCTGCTGCTC CCGGCGGCGG 
    CCGACGCGAC GTCGTCGGTG CTGCTGGGCA TCAACTACGG CCGCGTCGGC 
    AACAACCTGC CCCCGGCGAA CGCCGTGCCG CCGATGCTGT CGTCGCTCGG 
    GGTCGGCCGA GTCCGGCTCT ACGACGCCGA CCCGGCCACC CTCCGCGCGT 
    TCGCCAACAC CGGGGTGGAG CTCGTCGTCG GCGTCCCGGA CGAGTGCCTG 
    GCTGCCGTGT CAACCCCCTC CGGCGCCGCG TCGTGGGTCC GCTCCGTCGT 
    CCAGCCGGCG CTCCCGGCGA CCAAGATCGC GGTGCTCACC GTCGGCAACG 
    AGGTGCTCAC CGGCGCCAAC AGCTCGTCGC TGTCGCGGTC GCTGCTCCCG 
    GCGATGCAGT GCCTCCACGA CGCGCTCGCG CAGCTCGGAC TCGACAAGCA 
    GGTGGCCGTC ACCACGGCGC ACAACCTCGG CGTGCTCGCC ACGTCGTACC 
    CGCCGTCGGC GTACTTCCGC AAGGACCTCC TCCCGCTGCT CTGCCCCATC 
    CTCGACTTCC ACGCCCGCAC CGGCTCGCCG TTCCTCGTCA ACGCCTACCC 
    CTACTTCGCC TACGCCGAGG ACCCCACCGG CGTCGAGCTC GAGTACGCGC 
    TGCTCGAGCC GACCTACGCC GGCGTCGCCG ACCCCTCCTC CGGCCTGCAC 
    TACCCCAACC TGCTCGTGGC GCAGGTGGAC GCCGTGTACC ACGCCATCGC 
    GGCGGCCAAC ACCGCGGCGG CGCGGGCGGT GGAGGTGCGG GTGTCGGAGA 
    CCGGGTGGCC GTCCGCCGGC GACGCCAACG AGACCGGCGC GACGCCGCAG 
    AACGCCGCGA GGTACAACGG CAACGTGATG CGCCTCGTCG CCGACGGGAA 
    GGGCACGCCG CTCCGGCCGT CGGTGGCGCT GCGCGCCTAC ATGTTCGCGC 
    TCTTCAACGA GAACATGAAA CCCGGCCCGA CGTCGGAGCG AAACTACGGC 
    CTCTTCAAGC CCGACGGCAC GCCGGTCTAC GAGCTCTCCT ACCGCCTGCC 
    CAAGGACAAC ACCAACTCCG GCGGCGGCGG CGGCGGCATC GGCGGCGGCA 
    GCGGCACCAT TGGCGGCGGC GGCGAGTACA ATGGCCATGG CGAGGATGGC 
    GGCTACTACA GCATCTCGGC CTCAGCAAAG CCGGCAGGTT GGTGGACATG 
    GTGGACACAA GCAGCTGTAG CAGCATGTGT GGCTGTCCTG ATGAGGATGA 
    TGGCATTGTG ATTGTGAGCA GATCAAGTGA TGGTAGTAGG AAGGAAGCCT 
    CTGGTTTCTA ATGGAGTCAG AGGAGGCGCA CATTGGGATG CATTGCTTCT 
    TGCTGTTGCT GCAGTGGACA AAGGCATTGA TGGTGGTGAA TGTCCCTTAA 
    TTTAATCTCT GTCCTTGCCA TGTTGTTGTA ATTGATATGG CCTTGTAATT 
    GAGGGGGTAA TCTAATGGGT TGGTCAGTGT CATTAAACTA GACTTTTTTT 
    TCTCTGTTTT GAAGCTCTTC CTCTCTTGAA TTTTGATATT AAATTGTTCA 
    TTTTGGGGAG ATAACACTAG TGATTAACAG ATAATGGCTT AGATACGATA 
    CAAAGTC

    Gene models with high sequence identity

    1. AT5G42100.2 [+] show detail - beta-1,3-glucanase_putative
      E-value: 7e-95; Score: 345.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 7.4e-96
    Gene3D Glycoside hydrolase, subgroup, catalytic core 3.5e-101
    HMMPfam Glycoside hydrolase, family 17 1e-84

    See the detailed result >

    AT5G42100.2

    Model type
    Protein coding
    Short Description
    beta-1,3-glucanase_putative
    Curator Summary
    encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd
    Computational Description
    ATBG_PAP; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, glucan endo-1,3-beta-D-glucosidase activity; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR