K10344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10344

Determination of introduced cDNA(s)

  • J023008C06 - Rice Full-length cDNAs - Original: J023008C06

    full reading [+] show sequence

    Nucleotide sequence: J023008C06 - full reading
    GTGAGAGTTC GAGAGCAGGG AAATCTGAAA TTTGGAGAGA CCAAAGATGG 
    CAGCGACGAA CAAGAAGATC GTGCTGAGGA ACCACGTGAC GGGGTTCCCC
    AAGGAGTCCG ACATGGAGCT CGTCGCCGCG ACGGGCGCCG CGCCGTCCAG
    GGTGCCCGAG GGCACGGACG GCGCCGTCCT CGTGAAGAAC CTGTACCTGT
    CCTGCGACCC CTACATGCGC GGCCGCATGT CCAGCCATGA CGGCTCTTAC
    GTCGACGCTT TCGTCGTCGG CGAGGCTATC ACCGGCTATG GCGTCGGGAA
    GGTGGTGGAC TCGAGCCACC CGGGGTTCAA AGCCGGCGAC CTCGTGTGGG
    GAATGACGGG ATGGGAGGAG TACAGCCTCA TCAAGGATCC CAGCAGGGCC
    CTCTTCGCCA TCCGCCATCC CGACCTGCCG CTCTCCTACT ACACCGGCCT
    CCTCGGCATG GCGGGCTTCA CGGCGTACGT CGGGTTCCAC GAGATATGCG
    CGCCAAGGGA AGGCGAGAGG GTGTACGTCT CCGCCGCGTC GGGCGCCGTG
    GGGCAGCTGG TGGGACAGTT CGCCAAGCTC ATGGGCTGCT ACGTCGTCGG
    GAGCGCCGGC TCCGACGACA AGGTGAGGCT GCTCAGGGAG AAGTTCGGCT
    TCGACGACGC CTTCAACTAC AAGAAGGAGA GTGACCTGAG CGCGGCCCTG
    AAGCGGTGCT TCCCGGAAGG GATCGACATC TACTTCGAAA ACGTGGGCGG
    CGCGATGCTG GACGCCGTGC TGCTCAACAT GCGGGTGCGC GGCCGCGTCG
    CGGCCTGCGG GATGATCTCG CAGTACAACC TGGAGCACCC CGACCCCGTC
    CACAACCTGA CGGCCATCGT CACGAAGCGG CTCCGGATCG AAGGGTTCAT
    CGTGTCCGAC CACTACGCCA GGTACAGGGA GTACGAGGAG AAGGCCGCGC
    GGTATGTGAA GGAGGGGAAG ATCGCGTACG TGGAGGACGT CGCCGAAGGG
    CTGGAGAACG CGCCGGCCGC GCTCATCGGG CTCTTCTCCG GCCGCAACGT
    CGGCAAGCAG GTGGTCGTCG TCGCCAGGGA GTAACCGCGA GATGTGTAGT
    TAAACGTGTA GCGGTATGGT TACACTTCAC TAGTGCTGTG CATTGTCCTG
    ATGGCTGATG CTGTGTTTAG ATGTGTCAAG CTTAGCTGAA TGCGTTGGAT
    TTTGTATCTT GAACATCAAT AACGGTGTAT TTTAACAAGT GTTTAGTTGT
    TTTGAATACA CAGTAAGAC

    Gene models with high sequence identity

    1. AT5G16970.1 [+] show detail - alkenal reductase
      E-value: 1e-131; Score: 466.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Polyketide synthase, enoylreductase 0.00086
    HMMPfam Alcohol dehydrogenase, zinc-binding 7.1e-23
    Gene3D NAD(P)-binding domain 9.9e-46
    HMMPanther ALCOHOL DEHYDROGENASE 9.1e-147
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 9.1e-147
    superfamily NAD(P)-binding domain 2.8e-52
    superfamily GroES-like 3.7e-35

    See the detailed result >

    AT5G16970.1

    Model type
    Protein coding
    Short Description
    alkenal reductase
    Curator Summary
    encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls
    Computational Description
    alkenal reductase (AER); FUNCTIONS IN: 2-alkenal reductase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G17000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR