K10407

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10407

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10407

Determination of introduced cDNA(s)

  • J033100G22 - Rice Full-length cDNAs - Original: J033100G22

    full reading [+] show sequence

    Nucleotide sequence: J033100G22 - full reading
    GGCCCTAAAA CTCAAGGGTA CCCCAAATTC CCCATCGCCG CCGCCCCCGA 
    TCCGGCGATG CCGCTGCGCC CGCCGCCCCC GCCTCAGGGA TTCCTCACCG
    CGTATCCATC CGCAGCTTTC CCTCCGGTGA AGCGGCCGCA TGAGGACGAC
    CTCGGCGCCG GTGACGTGCT GACCTTCAGG TTCCACTCCC TCGCCGTCTT
    GAAATTATTC GACCGCATCC GCGAGTACCG TCTGCACGAT TACCGGTACC
    AGGCAACGCG AGGCTGGTAC AGCTCCGGGA CGGCGCCGGA GGATGCTCTT
    CTTCCCTGTG CGGTTGCTCG ACCACCGAGG ATGTATGGGT GCGTGATCGG
    GGTGCAGCGC GGTCGGACGG TGGAGGTCGT CGACACCTCC GACATCTTGC
    TCGACACCGA CCCCGGAACC CTCGACCGCG ACTTGTTGAA GAAGAAGCTC
    GAGACCTACA AGAAGGCGTT CCCTGGCTTG GCCATTCTTG GGTGGTACTC
    CATTGACACT CATGTGACGA ACACCGATAT GGAAACCAAC CAGGCTTTGA
    TGGATGCTAG TGGAACAACC TTTTATCTTC TATTCAATCC TGCAATGAAC
    CTTTCCCTGA AGGATCTCCC AGTGACTATT TATGAAAAAG TGCACTCTAC
    CAATAGGAGT CCCACTCCGT TAATCTTTGT CCAAGGCAAA TATAAAACTG
    AGACTGTAGA GGCAGAGAGG ATATCTTTAG ACCATACGTG TCCTGTAGTT
    TCTGATGTTA GTGTGCCACC TCTTGTTGGA AAAGGGCAAC ATGCAAATAT
    TATGCAGACT TCTGGATTTA AGCTGATGCT GTTTGAAATT CCTTCTGGTT
    TCGCGATGTT TGAAGTTTCA CAGGAACTGA TTGCACGCCC TAAGGACATA
    TGGGCACGAT TTGCTTATCA GGATGACATT ACAAATGTTA TTGTTACCCT
    GGGTTCTATT CAGATCCATA ACAAATCTGT TGCTAGGGAT ATTATTGTTG
    GTCCTGGTGA CGAACTGAAA GAATTTATCC TAAGCTTTTG CACTCACAAC
    TACTTAATTG TTCAAGATGT AGAGCTTAAA GATGTTATCG AGAAGAAACT
    TAATATCTAT TGTTACTGTA ATCCAACTGT TGTCGGTGAA TTGACATGGG
    GACTGAACTA TGTCCTACAT AAGTTGTTAC CTCAAGAGCA AAGTTTAACT
    CATGAGCCTT ATCTTCCACT AAGCAAGGCA ATGTCTAAGC AGATAAAAGA
    ATATGGATTC AAAATCTCGC CACGAGAGGG AATTGTACCA AGAGATGAGA
    GATACACTAG AGCAGAGATT ATGGAGTTCA TTGACTTCAT AATTGCAGCT
    CCTGAAAACA GAAGCCGGAC GCTATCGTTC CTGCGGCGCA TCGAGGCAGC
    TTCTATTGAT GATTCTCCTC CACCGCCTTC ACTGCCAGGA GGGATGGGTG
    TTTCGTTGTT GAAGCGTCTT CGTTTGGATT GGATAACTGT TTGTTGTCTA
    GGATGTGCAG TTGCTCTTTA CCCTTTCTAC CGCAGAGTAT GAATGACTTT
    GTTATAAAAT TCACTATGTT TTGAGGACAA ATACATATTC TCTGACCTGC
    TTGATTAGTA CCAAATTAAT CCTTAATCAA AGACCATTTT ATGT

    Gene models with high sequence identity

    1. AT4G26430.1 [+] show detail - COP9 signalosome subunit 6B
      E-value: 4e-36; Score: 149.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNALOSOME SUBUNIT 6 2.7e-37
    HMMPanther EIF3F-RELATED 2.7e-37
    HMMPfam Mov34/MPN/PAD-1 0.00000011

    See the detailed result >

    AT4G26430.1

    Model type
    Protein coding
    Short Description
    COP9 signalosome subunit 6B
    Curator Summary
    one of two genes encoding subunit 6 of COP9 signalosome complex
    Computational Description
    COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR