K10407

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10407

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10407

Determination of introduced cDNA(s)

  • J033100G22 - Rice Full-length cDNAs - Original: J033100G22

    full reading [+] show sequence

    Nucleotide sequence: J033100G22 - full reading 
    GGCCCTAAAA CTCAAGGGTA CCCCAAATTC CCCATCGCCG CCGCCCCCGA 
    TCCGGCGATG CCGCTGCGCC CGCCGCCCCC GCCTCAGGGA TTCCTCACCG 
    CGTATCCATC CGCAGCTTTC CCTCCGGTGA AGCGGCCGCA TGAGGACGAC 
    CTCGGCGCCG GTGACGTGCT GACCTTCAGG TTCCACTCCC TCGCCGTCTT 
    GAAATTATTC GACCGCATCC GCGAGTACCG TCTGCACGAT TACCGGTACC 
    AGGCAACGCG AGGCTGGTAC AGCTCCGGGA CGGCGCCGGA GGATGCTCTT 
    CTTCCCTGTG CGGTTGCTCG ACCACCGAGG ATGTATGGGT GCGTGATCGG 
    GGTGCAGCGC GGTCGGACGG TGGAGGTCGT CGACACCTCC GACATCTTGC 
    TCGACACCGA CCCCGGAACC CTCGACCGCG ACTTGTTGAA GAAGAAGCTC 
    GAGACCTACA AGAAGGCGTT CCCTGGCTTG GCCATTCTTG GGTGGTACTC 
    CATTGACACT CATGTGACGA ACACCGATAT GGAAACCAAC CAGGCTTTGA 
    TGGATGCTAG TGGAACAACC TTTTATCTTC TATTCAATCC TGCAATGAAC 
    CTTTCCCTGA AGGATCTCCC AGTGACTATT TATGAAAAAG TGCACTCTAC 
    CAATAGGAGT CCCACTCCGT TAATCTTTGT CCAAGGCAAA TATAAAACTG 
    AGACTGTAGA GGCAGAGAGG ATATCTTTAG ACCATACGTG TCCTGTAGTT 
    TCTGATGTTA GTGTGCCACC TCTTGTTGGA AAAGGGCAAC ATGCAAATAT 
    TATGCAGACT TCTGGATTTA AGCTGATGCT GTTTGAAATT CCTTCTGGTT 
    TCGCGATGTT TGAAGTTTCA CAGGAACTGA TTGCACGCCC TAAGGACATA 
    TGGGCACGAT TTGCTTATCA GGATGACATT ACAAATGTTA TTGTTACCCT 
    GGGTTCTATT CAGATCCATA ACAAATCTGT TGCTAGGGAT ATTATTGTTG 
    GTCCTGGTGA CGAACTGAAA GAATTTATCC TAAGCTTTTG CACTCACAAC 
    TACTTAATTG TTCAAGATGT AGAGCTTAAA GATGTTATCG AGAAGAAACT 
    TAATATCTAT TGTTACTGTA ATCCAACTGT TGTCGGTGAA TTGACATGGG 
    GACTGAACTA TGTCCTACAT AAGTTGTTAC CTCAAGAGCA AAGTTTAACT 
    CATGAGCCTT ATCTTCCACT AAGCAAGGCA ATGTCTAAGC AGATAAAAGA 
    ATATGGATTC AAAATCTCGC CACGAGAGGG AATTGTACCA AGAGATGAGA 
    GATACACTAG AGCAGAGATT ATGGAGTTCA TTGACTTCAT AATTGCAGCT 
    CCTGAAAACA GAAGCCGGAC GCTATCGTTC CTGCGGCGCA TCGAGGCAGC 
    TTCTATTGAT GATTCTCCTC CACCGCCTTC ACTGCCAGGA GGGATGGGTG 
    TTTCGTTGTT GAAGCGTCTT CGTTTGGATT GGATAACTGT TTGTTGTCTA 
    GGATGTGCAG TTGCTCTTTA CCCTTTCTAC CGCAGAGTAT GAATGACTTT 
    GTTATAAAAT TCACTATGTT TTGAGGACAA ATACATATTC TCTGACCTGC 
    TTGATTAGTA CCAAATTAAT CCTTAATCAA AGACCATTTT ATGT

    Gene models with high sequence identity

    1. AT4G26430.1 [+] show detail - COP9 signalosome subunit 6B
      E-value: 4e-36; Score: 149.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNALOSOME SUBUNIT 6 2.7e-37
    HMMPanther EIF3F-RELATED 2.7e-37
    HMMPfam Mov34/MPN/PAD-1 1.1e-07

    See the detailed result >

    AT4G26430.1

    Model type
    Protein coding
    Short Description
    COP9 signalosome subunit 6B
    Curator Summary
    one of two genes encoding subunit 6 of COP9 signalosome complex
    Computational Description
    COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR