K10411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10411

Determination of introduced cDNA(s)

  • J023006A18 - Rice Full-length cDNAs - Original: J023006A18

    full reading [+] show sequence

    Nucleotide sequence: J023006A18 - full reading 
    GACATATGCA GCTGGAGTAG TAGCAGCTCC GATGGAGGCG ACGACGACTG 
    ACGGCACGAC GGACCACGCG GGGAAACCGG CGGTGAGGAG CAAGAGCGGG 
    ACGTGGAGGG CGTGCCCGTT CATCCTGGGG AACGAGTGCT GCGAGCGCCT 
    GGCCTACTAC GGCATGAGCG CCAACCTCGT CAACTACATG GTCGATCGCC 
    TCCGCCAGGG CAACGCCGGC GCCGCCGCCA GCGTCAACAA CTGGTCCGGC 
    ACATGCTACG TCATGCCCCT CGTCGGCGCC TTCCTCGCCG ACGCCTACCT 
    CGGTCGCTAC CGCACCATCG CCGCGTTCAT GGCGCTCTAC ATCGTCGGCC 
    TCGCGCTCCT CACCATGAGC GCCTCCGTGC CAGGCATGAA GCCGCCTAAC 
    TGCGCCACAA TATCCGCCTC CTCGTGCGGG CCCTCCCCAG GCCAGAGCGC 
    CGCCTTCTTC GTCGCGCTCT ACCTCATCGC CCTGGACACC GGCGGGATCA 
    AGCCCTGCGT CTCCTCCTTC GGCGCCGACC AGTTCGACGA CGCCGACCCA 
    CGCGAGCACC GGAGCAAGGC CTCCTTCTTC AACTGGTTCT ACATGTCCAT 
    CAACGTCGGC GCCCTGGTGG CGTCGTCGGT GCTCGTCTGG GTGCAGATGA 
    ACGTGGGCTG GGGGTGGGGC TTCGGCATCC CGGCCGTGGC CATGGCCGTG 
    GCCGTCGCCA GCTTCCTCAT GGGGAGCAGC CTCTACAGGC ACCAGAAGCC 
    CGGGGGGAGC CCGCTCACCA GGATGCTGCA GGTGGTCGTG GCCGCCGCCA 
    GGAAGTCAAG GGTGGCGCTG CCCGCCGACG CCGCCGCGCT ACTCTACGAG 
    GGCGACAAGC TGGCCTGCGG GACGCGGCGG CTGGCTCACA CGGAGCAGTT 
    CAGGTGGCTG GACCGGGCTG CGGTGGTGAC ACCGACGACG GACAAGGACG 
    ACGACACCGG CAGCAGGTGG CGGCTGTGCC CGGTGACGCA GGTGGAGGAG 
    CTCAAGGCGG TGGTGCGGCT GCTGCCGGTG TGGGCGAGCG GGATCGTGAT 
    GTCGGCGGTG TACGGGCAGA TGAGCACCAT GTTCGTGCTG CAGGGGAACA 
    CGCTGGACCC TCGCATGGGC GCTACCTTCA AGATCCCCTC GGCGTCGCTC 
    TCCATCTTCG ACACCCTCGC CGTCCTCGCC TGGGTCCCCG TCTACGACCG 
    CCTCATCGTC CCCGCCGCCC GCCGCTTCAC CGGCCACCCG CGCGGCTTCA 
    CGCAGCTCCA GCGCATGGGC ATCGGCCTCC TCATCTCCGT CTTCTCCATG 
    GTGGCCGCCG GGGTGCTGGA GGTGATGCGC CTCCGCGTCG CCGCCGCCCA 
    CGGCATGCTC GACTCCACCT CCTACCTGCC CATCTCCATC TTCTGGCAGG 
    TGCAGTACTT CATCATCGGC GCCGCTGAGG TGTTCGCCTT CATCGGCCAG 
    ATCGACTTCT TCTACGACCA GGCGCCCGAC GACATGCGCA GCACGTGCAC 
    CGCGCTCTCG CTCACCTCCT CCGCGCTCGG CAACTACCTC AGCACGCTGC 
    TCGTCGTCAT CGTCACCGCC GCATCCACCA GGGGCGGCGG CCTCGGATGG 
    ATCCCCGACA ACCTCAACCG CGGCCACCTC GACTACTTCT TCTGGCTGCT 
    CGCCGCGCTC AGTGCTGTCA ACTTCCTCGT CTACCTCTGG ATCGCCAACT 
    GGTACAGGTG CAAGACAATC ACCACCACTG AAGCAGCCGC TCAGACTTGA 
    GGGCCGGGAC CCGGGAGATT ATTACAATCT GAATCAATTT CTCAGAACCA 
    GTATTAGTTA CTGTTTTATT ACAACCTCGA ATCCCAAATG CTACAACATA 
    CATACTGCTA TTTTCTGTCA TAGCC

    Gene models with high sequence identity

    1. AT5G01180.1 [+] show detail - peptide transporter 5
      E-value: 0; Score: 691.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPfam Oligopeptide transporter 1.5e-96
    superfamily Major facilitator superfamily, general substrate transporter 1.9e-25
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0

    See the detailed result >

    AT5G01180.1

    Model type
    Protein coding
    Short Description
    peptide transporter 5
    Curator Summary
    Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.
    Computational Description
    peptide transporter 5 (PTR5); CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 1 (TAIR:AT3G54140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR