K10414

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10414

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10414

Determination of introduced cDNA(s)

  • J013079M07 - Rice Full-length cDNAs - Original: J013079M07

    full reading [+] show sequence

    Nucleotide sequence: J013079M07 - full reading 
    GCTTCCAACG CCGGCCACTC GTCTCCTCCT CCTCCCACCT CCCGTTTCCC 
    CCGCGCCATC CTCCTCCGCC TCGCCGCCAT GGCCGCGACC CCGCCGTCGT 
    CGCAGCACCG GCGGCCGCTG TCCTCCTCCG CCTCCGCCGC CTCCCTCGCT 
    GGCAAGCCGC GGGGGGGCGG GCTCCTGCTC GGGCGGTACG AGCTCGGCCG 
    CCTCCTCGGC CACGGCACCT TCGCCAAGGT GTACCAGGCG CGGAGCGCGG 
    ATTCCGGGGA GCCGGTCGCG ATCAAGGTGC TCGACAAGGA GAAGGCGATG 
    CGGCACGGCC TCGTCCCGCA CATCAAGCGG GAGATCGCCA TCCTCCGCCG 
    CGTCCGCCAC CCCAACATCG TGAGGCTGTT CGAGGTGATG GCCACCAAGT 
    CCAAGATCTA CTTCGTGATG GAGCTCGTCC GCGGCGGGGA GCTGTTCGGC 
    CGCGTCGCCA AGGGGCGGCT CAAGGAGGAC ACCGCGCGGC GCTACTTCCA 
    GCAGCTCGTC TCCGCCGTCG GGTTCTGCCA CGCGCGCGGC GTGTTCCACC 
    GCGACCTCAA GCCCGAGAAC CTCCTCGTCG ACGAGCACGG CGACCTCAAG 
    GTCTCCGACT TCGGCCTCTC CGCCGTCGCC GACCAGTTCC ACCCCGACGG 
    CCTCCTCCAC ACCTTCTGCG GCACGCCCTC CTACGTCGCG CCCGAGGTGC 
    TCGCGCGCCG CGGCTACGAC GGCGCCAAGG CGGACATATG GTCCTGCGGC 
    ATCATCCTCT TCGTGCTCAT GGCTGGCTAC CTTCCGTTCC ATGACCAGAA 
    TCTCATGGCC ATGTACCGAA AGATTTACAG GGGGGAATTC CGGTGCCCGA 
    GATGGTTCTC CAAGGATCTT TCCAGTCTAC TGAATCGCAT CCTTGACACG 
    AACCCAGAGA CAAGGATCAC TGTCAAAGAG GTCATGGAGA GCAGGTGGTT 
    CCAGAAGGGA TTCCGGCCGG TCAGATTCTA TGTTGAGGAT GATCAGGTTC 
    ACAGCTTGGC AGATGGTGAT AATGATATGC CGGAGTTGGA ACCTAGTGAG 
    CCTCCTCCTC CTCCTCCGTT TCCGCCGCCG CCGCCGCAGC AAGGTGATGA 
    CGGTGAGGAG TCGGGATGGG AGTCGGACTC ATCCGTGGCA TCATGTCCTG 
    CCACATTGTC ATCTGAGGAG CGTCGGCAAA GACCTCTCGG GTCTCTCACA 
    CGGCCAGCAA GTCTTAATGC GTTCGATATC ATATCGTTCT CAAAGGGATT 
    TGATTTGTCG GGGTTGTTTG AGGAGCGAGG GAGTGAAGTG AGGTTCATAT 
    CGGCAGAGCC TATGCAAACA ATCATCACAA AATTGGAGGA GATCGCAAAG 
    GTGAAGAGCT TCTTCGTTCG GCGAAAAGAC TGGCGAGTGA GCATAGAAGG 
    CACGAGGGAA GGTTTGAAGG GTCCATTGAC AATCGGCGCT GAGATATTTG 
    AGCTCACACC AAGCCTGGTG GTAGTGGAGG TGAAGAAGAA GGCAGGGGAT 
    AAGGAAGAAT ATGATGACTT CTGTAACAGG GAGTTGAAAC CTGGGATGCA 
    GCATCTCGTA CACCATATGG GATCAGTTCC AAATATACCT TCTGATACGG 
    AGTAGTTTGA ACTAAGAAAG GTAGTTCTCT TTCTTGGAGG GGTATAAGGA 
    AATTTTGGAT TAAAAGTATA TGTCTATGCA AGCATGAACA CCTGAGAGGC 
    AAAATGATAC CCAATTCCTT TAGACCAGTG TCCATGTTTT GGTGCTGTTC 
    GTTTCTTCAA TCGAAATGAT GTATGCTAGT GTTTGCATGC TAATATCAGC 
    TATCAAATGT CTGTTTTTAG CTGTTACAGT TTAAAGAGAG TGACAAATCT 
    GAGTATATGG CATCAGTATC AATGAAGTGG ACTAGACTTT TATGTATGCC 
    GCAGCAGTGC AGCCATTTGT ATTTCTATGC TGCCAGTTAG TTCTCTGAAT 
    ACATATGACA TCAACACTGA AGAAATTAGC TCGAAGTGCT CTAAAGAAGT 
    TCTGTTTTGG GATTAAAATT GTAAATATAG GGTGAATGAA TAAATTAGAC 
    AAAGCGTTAG CATTCTAAGT ATCTAGTTGT TTATTACTTC TGTGCATCAA 
    TTTGAATGCA CACTTCTGTA TACCATTGTT GTGCTACCTT TTGTTTAAGT 
    AACTCAAATA CTGTATACTG GTGTTGT

    Gene models with high sequence identity

    1. AT4G18700.1 [+] show detail - CBL-interacting protein kinase 12
      E-value: 2e-168; Score: 589.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 4.3e-106
    HMMSmart Tyrosine-protein kinase, catalytic domain 8.8e-12
    ProfileScan Protein kinase, catalytic domain 52.428
    ProfileScan NAF/FISL domain 14.494
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 5.7e-65
    superfamily Protein kinase-like domain 3.6e-92
    HMMPanther CBL-interacting protein kinase 4.7e-226
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 4.7e-226
    HMMPfam Serine/threonine-protein kinase-like domain 1e-73
    HMMPfam NAF domain 6.7e-22

    See the detailed result >

    AT4G18700.1

    Model type
    Protein coding
    Short Description
    CBL-interacting protein kinase 12
    Curator Summary
    Encodes CBL-interacting protein kinase 12 (CIPK12).
    Computational Description
    CBL-interacting protein kinase 12 (CIPK12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 19 (TAIR:AT5G45810.1); Has 132740 Blast hits to 130588 proteins in 4556 species: Archae - 205; Bacteria - 15732; Metazoa - 48597; Fungi - 13262; Plants - 32355; Viruses - 523; Other Eukaryotes - 22066 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR