K10421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10421

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10421

Determination of introduced cDNA(s)

  • J033147H12 - Rice Full-length cDNAs - Original: J033147H12

    full reading [+] show sequence

    Nucleotide sequence: J033147H12 - full reading 
    GGCTCCTGCA ATCCACCCGC CCCCTGTTTC GTCAAACTTC TCATCTCCCC 
    TTCCCGTCCG CCGCCATGCC GCCGGCCGGT AGCCTCACCG ACGAGCAGCT 
    CCGCTTCTTC GACGCCAATG GGTACCTCGT GCTGGGGTCG TTCTCCAGCG 
    CGGAGGAGGT GAGGGCGATG AGGGACCGCA TGGCGGAGCT CGTCGACGGC 
    TTCGACGGCG CTGGCGACGT CTTCTCCACA AAGGATCACC GGCAGGTGAA 
    GAACGACTTT TTCTTCAAGA GTGCGGAGAA TATCTCTTTC TTCTTTGAGG 
    AAAAGGCATT TGGAGATGAT GGATGCTTGA AGCAGGCAAA GGAACTTTCA 
    ATCAATAAAG TTGGGCACGC GTTACATGAA CTTGACCCTG TGTTCAAAAA 
    GTTCTCTTTT GGAGCGAATG TTTCCAGCCT GTTCTCTTCT TTACGCTACA 
    AGAGACCTGC AGTTATTCAA TCTATGTACA TCTTTAAGCA ACCAGGCATT 
    GGTGGCGAGG TGGTACCACA CCAGGATAAT ACATTCCTAT ATACAGACCC 
    TCCATCGTGC ACTGGGCTGT GGCTTGCACT CGAAGATGCG ACAAAAACGA 
    ATGGTTGCCT TTGGGCAATT CCTGGATCAC ATAAAAATGG CCTGAAAAGG 
    CGAATGATCA GAGATGAAAT CGATACTCAT TTTGATCATC CTTCGCCAAC 
    CTATGATCTG AAAGAATTTG TGCCCTTAGA AGTAAAGTCA GGTGATTTGG 
    TGGTTATTCA TGGAGATCTT ATACACCAGA GCTTTGAAAA TCTTTCTCCG 
    GTGTCAAGAC ATGCACTGAG CTTACATGTA ATTGATACCG AAGGATGTGA 
    ATGGTCCAAG CAAAACTGGT TACAAAGGAA AATCCCACCT CAGCCACTTT 
    ATGAAAATTA GTTGAAGCAG TTACCTATAT GTCAAATAAA CGAGTGGTGA 
    CCTAGAAGCA ATGGTGATGA TGCTGATTAC CTGTCCTCGT CGCAATAAAT 
    CTGCAGTACG ATGTTGAGTA GCTGTGCTTT CTTCTCCCGT CTTCAGACAG 
    TGTAAATACC TTGCTACTCT GTTTTCATGG ATGAATTTTA TGGCAATAAA 
    TTTGATGTAC GATGTAGAGT AGCTGTGCTT TTTTCCCCGT CTTCAGACAC 
    AAGTCACACA ACTACGCTGC TACTCTGTTT CCAGGGGTGA TATTTATGCT 
    TAATAAAATC TATCTCCAGT TCTTAATGTT

    Gene models with high sequence identity

    1. AT2G01490.1 [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
      E-value: 3e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phytanoyl-CoA dioxygenase 2.3e-66
    HMMPanther PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 1.8e-123

    See the detailed result >

    AT2G01490.1

    Model type
    Protein coding
    Short Description
    phytanoyl-CoA dioxygenase (PhyH) family protein
    Computational Description
    phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR