K10446

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10446

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10446

Determination of introduced cDNA(s)

  • J033084B06 - Rice Full-length cDNAs - Original: J033084B06

    full reading [+] show sequence

    Nucleotide sequence: J033084B06 - full reading 
    GGGTCTGGAT TCCATCTTCC TCCTCAGCTC CTCCTCCTCA CAACCAGCTT 
    CTTCCTCCTC CACCTCGCCC AATTCTCTCC TCCACGGCTC CACCTCTGCT 
    CGATCGGATC AAGATCAGAA TCACGATCAG ATCGATCCGC CCGCCATGAG 
    CACGCTATCC GCCGGGGTCC TCCTCAAGCT GCTCGACGGC ATGAAGGCCG 
    GCGCAGCCAA GCCCGTCGGG GAGCACCGCA CCGCGCTGCT CCAGGTCACC 
    GACATCGTCC CCGCCGACCT CGACGACAAG GACCTCCTCC CCCGCCATGG 
    CAAGTTCTAC GTCAAGGTCT CCGACTCCTC CCACTCCATC TACGCCACCC 
    TCCCGCTCCC CCAGGCCGAT CTCGTCCTCA GCAACAAGCT CCAGCTCGGC 
    CAGTTCGTCC ACCTCGACCG CCTCGACCCG GGCTCCCCCG TCCCCGTCAT 
    CGTCGGCGCC AGGCCCCTTC CCGGCCGCCA CCCGCTCGTC GTCGGCACCC 
    CCGACCCGGC CACCCGCGCC AAGCCCGCCG CGCCCAGGAG GGGCTCCTGG 
    GGCCCTGAGA ACCATGCCGG AATCCTCGCC TCCCCCAGGG TCATCAAGCC 
    CACCACGCTC AACTTCGAAG ACAGGACGCC CGTCAAGGAG AGACCGCCCG 
    CGCCCTCGCC GGCGCGGAGC ACCGCCTCCT CCCTCAGGAA GAGCAGCAGC 
    GTCCTCCCCA GGATCACCAG GAGCAAGAGC TTCGTCGCCG ACAGGGCTCC 
    TGACCACCCC AAGATCCCCA AGAGCCCATT CCCCGCCGTC CGTAACCCAC 
    CACTATATAC TCCCTCTTCA ATTCGATTAG ATTCGATTTG ATTCTTCTCT 
    GAATAATTGA GCAATTGGAG TTTCATCCAC AAGTTGTGAT AAGAGACGAT 
    TGATTATCTG TGCGGTGCAG GAGAAGATCT CAATGAGCTG CTACACAGCT 
    TCGCGGGCGA TGAGCAGAAG AGCGCCGCCC AAGGAGGAAG AACCCTCCTC 
    ACCGTCTTCG GATGATGAGC TCTGCAGCTC CGCGACGTCG TCCAAGAAGA 
    GGCCGTCCAC GAGCACTCGC GTTCCGGTGC CCGGGAAGCT CAATCTCCTG 
    GGGAAGGCAA GTCCCTCAAC TCAATTTCCA TCCTGAATTC GCAGCGTCCT 
    GATGCAGTCG TCTGATTGGG TTGCTGATTT CACTTCGTTC CTTGATTCAG 
    GAAGCCATGG AGCAGAGGGA GCAAGCTCAG AAGGCCGCCC TCGAGGCGCT 
    GCGCAACGCC TCCGCCACGG ACAACGTAGT CAGGATCTAC AAGATGTTCG 
    CTGAATTGAG CAAGACGGCG AGGCCCGACG CACCGGCCAC CTGCTTCGAG 
    AGCTTCCTCA GCTTCCACCA GGAGGCCGTG CAGGCCGTGA CCGACATCGA 
    GTCGATCCAG GCGGCCACCT CGATGGCCGG CGCCGTGGCA GCCGATGAGC 
    CGCCGGTCTT GCAGGAGATT GCGCAGAACA GGTCGTCGTT GTCCAAGAGG 
    AGAGGAGCCC TGGGCGTGTC CAAGTCGGTG TCGTTCGCGC CGGGCACGCT 
    GGATGACGGC GGCGGCAAGA ACCGGAGCTC CAACGCCAGC AGAAAGTGCC 
    TTGTACTAGA CAAGATCGGA GAAGACGGCG ACGAGAAGCG ATCTTCTTCT 
    GGTAGTACTA CCACCGGTGC TCTCGGGTCG TCGTTGAGGC TGGCGAAGCA 
    GATGCAATGT GAGGCGTCGA GCTGGTTTAT GGACTTCGTG GAGGCTGCGC 
    TGGAGACTGG CCTGAAGAAG AAGAGCAAGG CGTCGGCGAC GGCGGATGGG 
    CGGAAGCAGA GTAGCTGCTG CTGCCCGCAG TCGCTGATAC TGAGGGTGAT 
    CAACTGGGTA GAGATGGAGC AGAGTGGCGA TGGCAGCAGC AGGAAGCCCA 
    GTCACCCGAG AGCGGCTGCC ATTGCCAGGA AGCTTAGGAT AAAGGCCAAG 
    AACCCTTAAT TCCTGCTAGT TTATTCTTTT GCTTGTTGTA GGCATTGAGA 
    AGGTTATCTG TAGAATCTGT AGATCAAGGA AAGGAAGTTC CAGGATAGAG 
    ATGCGGATTC TTTTGCTTCA TGGTATATGA AGCTGTTCTG CCCTCCTCCC 
    TGTGACATAA ATTGACATCC ATACTATACA GTAGTCAATC AGCCACAGAA 
    GGAAGAAAAC ACCTCTGCTT GAGCAAGTGC TACGCTCTAG TTTGAGTACA 
    AGTAGTACCA TCCGTTATTA TTCATTTTAA CTTGTTTTTT TTATCATTGT 
    CTTATCTTGT GTTTTGCATG ATGGGGGTAA GACAACCATT TGCTTGACTA 
    ATTCAACCTG CTTTCGCGGT GATAGAAATT GTTCTGATCA CGTGGCATGA 
    ATGCTTTGCT ATACATGAAA GTTTG

    Gene models with high sequence identity

    1. AT1G23790.1 [+] show detail - Plant protein of unknown function (DUF936)
      E-value: 6e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Egg jelly receptor, REJ-like 8.59
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF936, plant 1.9e-55
    HMMPfam Protein of unknown function DUF936, plant 6.8e-66

    See the detailed result >

    AT1G23790.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF936)
    Computational Description
    Plant protein of unknown function (DUF936); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT1G70340.1); Has 265 Blast hits to 216 proteins in 30 species: Archae - 0; Bacteria - 7; Metazoa - 9; Fungi - 7; Plants - 237; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR