K10530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10530

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10530

Determination of introduced cDNA(s)

  • J033048L13 - Rice Full-length cDNAs - Original: J033048L13

    full reading [+] show sequence

    Nucleotide sequence: J033048L13 - full reading
    GATCCTCCCC TACCTGGAGG CTGCAGCTCC TGGCCTCCCG GGCAACTAGG 
    GTTCGGCAAA TCCCCCGCAA GGAGGGTGAA ACCCTTCCCC AAAACTCCCC
    AATCCCCACC CGACCTTCTT CGAAATCGGA GGCAAAACCC TAATCGCAAA
    CAGCTCGTCC TCGCGCGGCC GCCGCTCCGC AGCAATGGCG TCCCTCTTCA
    AGGACCCGAC CAAGCTGTCC GCGTACCGGG ACAGGCGGTT CACCGGGACG
    CAGGAGGAGT ACGAGGCGGC GCTGCAGGCG TCGGTGACGG TGTACGTCGG
    GAACATGTCC TTCTACACCA CGGAGGAGCA GGCCTATGAG CTCTTCTCCC
    GCGCCGGCGA GATCAGGAAG ATCATCATGG GACTCGACAA GAACTCCAAG
    ACCCCCTGCG GCTTCTGCTT CATACTGTAC TACTCCAGGG AGGATGCTGA
    AGATGCGGTC AAATATATTA GTGGAACAAT GCTTGATGAT CGCCCAATTC
    GTGTTGATTT TGATTGGGGC TTTGAAGAAG GCAGACAATG GGGTCGTGGA
    CGGAGTGGTG GACAAGTAAG GGATGAGTAC CGCACGGACT ACGATCCTGG
    AAGAGGTGGC TATGGTAAGA TGGTTCAGAA AGAGCTAGAA GCACAACGTG
    AGTTAGTTGA CTATGGAGGT GCTTTTCAAC CTAATGCACC ACCTCAATAT
    GACAGAGGTG ACAGGAAGAG AGGGTATGGA GATTCTTACC GGAACGACAG
    AGATTACCAA CGGAAACGTT ACCGGAACGA TGAGCGATCG TCGCAAAGAG
    CACCTGACTC TGAGTTCAAG AGAGATGCGA TTGATTCGGA GAAGAATCCT
    AGGTTTCGTG AGAAAGGTGA TTCTGATGAA GAAGACGATG ATTATGATAA
    GAGACGCCGG CGCTGAACTG AAAGAAACAA TTGCTGATAA ATGCAAATGG
    GCAGTTGCAG TGACTACACT AGTAAAGCCC GTCGAGCTTA TGTTTTTTAC
    CCTGTTGTGT ACCATATGAC TTATATATCT GTCGTCAGCT CATTTCTATG
    TTGCGGTTCA TCACCACATG CTTGCATAGG TCTCGCATGC GACTGGGAAT
    GGATTTTGTG TTTATTGACA CTTCAGCTTA TGTATTGACC TGTTATTTAG
    GTTGGCAACT AATTGATTTT GGTCGGT

    Gene models with high sequence identity

    1. AT5G44200.2 [+] show detail - CAP-binding protein 20
      E-value: 9e-80; Score: 294.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 1.1e-21
    superfamily RNA-binding domain, RBD 9.7e-31
    ProfileScan RNA recognition motif, RNP-1 15.494
    Gene3D Nucleotide-binding, alpha-beta plait 3.4e-35
    HMMPanther 20 KD NUCLEAR CAP BINDING PROTEIN 7.3e-88
    HMMPfam RNA recognition motif, RNP-1 0.00000000000048

    See the detailed result >

    AT5G44200.2

    Model type
    Protein coding
    Short Description
    CAP-binding protein 20
    Curator Summary
    Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.
    Computational Description
    CAP-binding protein 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA metabolic process, RNA splicing, via endonucleolytic cleavage and ligation, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 9575 Blast hits to 9549 proteins in 2190 species: Archae - 96; Bacteria - 7682; Metazoa - 239; Fungi - 361; Plants - 280; Viruses - 2; Other Eukaryotes - 915 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR