K10533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10533

Determination of introduced cDNA(s)

  • J013001F13 - Rice Full-length cDNAs - Original: J013001F13

    full reading [+] show sequence

    Nucleotide sequence: J013001F13 - full reading
    GGTGTTTGGT AAGCCTCGTC TCGAAATGGC GACTTGCTCC GCTGCTTGCG 
    CTCGCCCAGC CGTCGTCGTC TTCGCGTCGC CGGCCGCCGC GCGGCGGCGC
    GCCGCCTCCT CCGTCTACCT CCCTGGTCGG CCTCTGCGCG GCGGCGGCGT
    CGTGCGATGC AGCGCTGGGC CTGTAAGCGG TGGGATGATC TCGAAGAAGG
    TGGCGGAGCT GTGGGCGGCG GCGAGGAGCG CGTCGCCGGT GGCGGTGATC
    GCCGCGGTGG CCGGAGCGGC GGTGGTCTAC AAGGTGGGGT CCAGTCTCCT
    CGCGCCGCCT CCTCCGCCGG CGAGGCCCCG GGAGGAGCCC AGCGAGGAGG
    CCCCGCCGCC TCCGGAGCCG GTGCAGGTGG GGGAGATCAC GGCGGAGGAG
    TTGCTGCAGT ACGACGGGTC CGACCCCGAG AAGCCGTTGC TCATGGCGAT
    CAAGGGGCAG ATCTATGACG TCTCCCAGAG CAGATTGTTC TATGGACCTG
    GTGGACCATA TGCATTGTTT GCTGGTAAAG ATGCCAGTAG GGCGTTGGCG
    AAGATGTCCT TTGAGCCACA AGATCTGACT GATGATATAT CTGGCCTAAG
    TTTACTTGAA CTCAGTGCCC TTCAGGACTG GGAGTACAAG TTCAGCAGCA
    AGTACGTGAA GGTTGGAACC ATAAAAAAGG TGCTCGTAGA ACAGGGTGGC
    GATAGCACTG CCGATGCAAT AGAGGAGGCA GCTGTCGATG GTGAAGACAG
    CATCCTGACT GCTAAGATGT CTAATCAATT ACTATATGAG GAAGAAATGG
    AAGTCGGTAG TGATGATCCA TGAAGGCTTC AGGAGTTGAA AACTGAATTG
    CCTTCTAGCA GCTAACTTCA CGCATCAAGA ATTCAAGACA AATAATCGCA
    GAATGATGTT TCATGAATTC ATGTGTCTAT AGGTGTAGAT TACAAGAAGA
    TACTGCATTA CTGCTGTCGA TTTCCCTTTG TCAATACTCA AGGATATGTT
    GCCGTAATGC CATGTTATT

    Gene models with high sequence identity

    1. AT3G48890.1 [+] show detail - membrane-associated progesterone binding protein 3
      E-value: 8e-45; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome b5 1.3e-32
    HMMPfam Cytochrome b5 3.6e-16
    Gene3D Cytochrome b5 3.1e-31
    HMMPanther STEROID BINDING PROTEIN 1.5e-72
    HMMPanther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-REL 1.5e-72

    See the detailed result >

    AT3G48890.1

    Model type
    Protein coding
    Short Description
    membrane-associated progesterone binding protein 3
    Curator Summary
    putative progesterone-binding protein homolog (Atmp2) mRNA,
    Computational Description
    membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR