K10539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10539

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10539

Determination of introduced cDNA(s)

  • J013038F20 - Rice Full-length cDNAs - Original: J013038F20

    full reading [+] show sequence

    Nucleotide sequence: J013038F20 - full reading 
    TCAGGTCCAG CACGAGTGCA CGCACAAGGA GTCAAGGAGG ACAAATCAAT 
    CCCCCGTAGC GCCTAGGAGA TGGACCAGAT GGTCGTGTAC TAGTGTGCCA 
    CTCGCCTCGA GGTGTGTGTC TCCTCCCCTT TTAAAACCCC CCAACGAAGA 
    GGCAGGAGCA GCCGAGCAGG ACGAGGAAGA AAACCCAACC CGCGCGAAGC 
    ACAAGCACAG AAGCAAAAGC GAACGACGAG GAGAGACGCG ACCACCGCCG 
    CGGGTCACTC CCCATCCCAA TCTCATCCAG ATTGGATTTG AGCGGATAGA 
    GGAGGGATGG ATGGGAATTT CGGGAGCGAG GAGCGGATTC TGTGGCCGGC 
    GTCGGTTCTT GCCGGCATCG CCATGTGCGC CGCGGTATAT GACATAACTC 
    AAAAGGTTAG CTCTCATTGC TTCAAGGGTT ATGACAATAT AAGCCCAATG 
    AAAAAGGTTG AATGGAATAA TAGGGGTTTC TCTACATTCC ATGCATTGGT 
    TGCAGCTGTT GTTTCTTTTT ACCTGGTTGT GATATCTGAC CTCTTCCATA 
    GCAACATAAT AATTGTTAGA AACTCATGGC TATCTGATGC CATGTTTGGG 
    GTCTCGATTG GTTACTTTTT GACAGATTTG GTGATGATTC TGTGGTATTT 
    CCCCTCTTTA GGTGGAAAGG AATATCTCCT GCATCATGGA CTTTCGATGT 
    ATGCAATCTG TCTTGCTCTG TTGAGTGGCA AAGCACACAT GTACATACTC 
    ATGGTTCTCT TTACTGAAGC CACCACTCCC TTTGTGAACC TTAGATGGTA 
    TTTGGAGGTT GCTGGTAAGA AGACGCATAA CCTTTACTTA TACAATGGAT 
    TGGCTCTGTT TGTCGGATGG CTGGTTGCTC GAGTAATCTT GTTCATATAT 
    TTCTTCACTC ACATGTACTT CCATTTTGAT CAGGTGAAGT CCATCTTCCC 
    CCTGGGCTTC TACAGTATAC TGACGGTGCC ACCGGCGCTG GCAGTGATGA 
    ACCTATTTTG GTTCTGGAAG ATATTCAAGG GAATGTTGAA GACCCTGTCT 
    AAAAGGAGAC AGCAAAGTGA AAACGGAAAG GCAGAGTAGA ACTTACAAGG 
    AAGGTGGAAG GAGGTTTTGT TCACTTTTAT TGTTAGTGCG TCTAACTTTC 
    GACAAATCAA AGTTAAACAT CCTTTGTACT TACATTACAT TTGGGCGTTT 
    TCTATTCATT AGTAGTATAT CTTTTCAATT CTAATTGCCT GCGAGTGTGA 
    GAACTTTATT GTAGAGTAGC CTGCATACTG CAGTCACTAC AATAATTCTA 
    ACCTCTCCTC TTTTTAATCG TCCATCCAGG CAACTGTACA CTATCTTATA 
    ACAGCATTGT CACTCCTCGC TTGGAGCTGC TTACCTACAG ACACACAGTA 
    ATATTGTACT ATCGAACTGT CGGCAACTTG CAGCAATTTT CGTGGACTTC 
    CACGTGCATT TCGTGGATCG ATAAGC

    Gene models with high sequence identity

    1. AT4G10360.2 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
      E-value: 6e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan TRAM/LAG1/CLN8 homology domain 40.793
    HMMPfam TRAM/LAG1/CLN8 homology domain 1.3e-32
    HMMSmart TRAM/LAG1/CLN8 homology domain 1.5e-53

    See the detailed result >

    AT4G10360.2

    Model type
    Protein coding
    Short Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Computational Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR