K10547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10547

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10547

Determination of introduced cDNA(s)

  • J033090J12 - Rice Full-length cDNAs - Original: J033090J12

    full reading [+] show sequence

    Nucleotide sequence: J033090J12 - full reading
    GGCCGCTCTC CAAAACCCTA GCTAACCCCT CCTCCTCCAG GTCCCTTCTC 
    CTCGCCGCCC CCCTCTCCCG CGGCGCCACC CCACTGCCCC TCCTGCGGCG
    CGATGTCTCC GCGGCCTACG GCGACGACGA CATGGACGAC GACTTCGGGG
    ACTTCGACCT CGACGACGGG GACGGCGTGG GGGACGACGA AGACCTCGAC
    AACGAGCAGG ACTACGACGT CGACTACGAC CGCCTGCTCG CCCCCGTCAA
    GGCGCCGCCG CGCCCGCTGT CGGGGGAGGG CGACGAGGAG GAGGAGGGGG
    ACATCGCCAT GGTCGCCGCC CAGAGCTTCG TCTCCACGCA GGACTCCGCC
    TCCGACACCG TGGTCGACTA CTCCGTCAAC GAGGACGAAT TCCACAAGAT
    TCGCCTACTG CACTGCGATT TTTTTATCCG CAAGGTGCCT GACCCCGACG
    ACGACGTCTT CGACTTCCGG GAGATGTATG TCACGCCGCC TGACACTGAC
    ATCTATTCCA TCCCAAGGGT TCTTGCTCCG ATGCCGCAAA AGTATTTGAG
    GTGCACGAAG AAAAATTTTG GTCGTTACCA TGTTAGTGAG CCGCCTGTTG
    AGCATTTGCG TGATCCCCTA TACAAGACAG AAAGGGAGAT CATGAAGGTT
    TTCTTAACAA AACATTACAG GAATAGGCGG TGTAACGACC CAGATTTTTT
    CCTTGATTTT GAAGAGATAT ATGTTATTGA CTCAAAAGCA AGGTCAATCA
    CGAGAGCAAA AGTTGTGGTT AGTGTCCCTG AAGGAAAGAA GAGGGACAGG
    AGAAATGACT TGCTACTCAT ACGAGATGGA GGGGAATCAT TCAGAATAAT
    CGACAAGACC AAAAGGGATG ATGCGACCAC TGTGATCCAA AGAGAGGAGT
    GGGCAAAGTC GAGGCAAGAT GTGGAGAAGC ACTTTAGGAA GCTCCGCGAC
    TTTGACTACT CAAATTGGTT CTGAAGAAAT AGTAGCTGGA GTCATTCAGC
    AGAGAAATTA TTTTGCTAAT TTTGCAGCTG CTTATATTAG AGGAAGCGAC
    CATGGACCAT GGTGCTCAAG GGAGAATCGC CATCTTCGAG TAGGCTAATT
    ATGTGTACTT TAGGTTTTTG TAGCAGGTAG AAGGCATGCC ACTTAGCGAG
    CCTATCTGTA GAAAACTGAA ATGTTTGATG CTTGTGAATG CACTACCTTG
    TTGAGTAGCC AACGAATATG TGGTCCTTGG ATTCAGAATG CACGTGTTTT
    TTATAGTATC GGATATCTAT ACTTGGATTC AGAATTTCCT G

    Gene models with high sequence identity

    1. AT1G21600.2 [+] show detail - plastid transcriptionally active 6
      E-value: 2e-80; Score: 296.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G21600.2

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 6
    Curator Summary
    Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
    Computational Description
    plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR