K10604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10604

Determination of introduced cDNA(s)

  • J013145E01 - Rice Full-length cDNAs - Original: J013145E01

    full reading [+] show sequence

    Nucleotide sequence: J013145E01 - full reading 
    GAGGCGGGCG AGAAGAGAGG AGACGTCACG GACGGAAGAG TCGAGTAGTA 
    GTAGGAGGAG GAGGAAGAAG AAGAAGAAGA AGAAGATGTC CATGTCCTTA 
    CTATCGGTTG GTAGGTAAGC CGAGGCACAC GCGGTCATCT CTCCACACAC 
    GCGCCCCCTC GCTTCCCCCA CATGTATATA TACCCCTCTC TCTCTCCCAA 
    CACTGACTCC ACCTCACCAC TCGATCGATC GCAAGAACAC GATAAGGATT 
    CAGGGATCGA TCGATTCATC TCTCCTCGTC GTTGGTCACA GGACGGAGAG 
    AGATCACCAT CAGCAGCTAG CAGCAGGATG ACGAGGAAGA AGGAGAGGTC 
    AGGGTGGGGG AGCCTGTTCA GGGGATGCCT GAGCGGAGGA GGCGCGGCGG 
    GGAGCCGGAA GGTGCGACCG GGGCCGAGGA CGGCGGCGGC GGCGGCGGCG 
    AAGCACGGCG GAGGAGCATC ATCGGCGGCG GCGCAGCGGC TGTCGTTCAC 
    GGACGTGATG AGCACGGCGT CGGAGCAGGA GCTGTCGGTG TCGCTGGTGG 
    GGTCGAACCT GCACGTGTTC ACGGTGGGGG AGCTGAAGGC GGCGACGCAG 
    GGGTTCCTCG ACGGCAACTT CCTCGGCGAG GGCGGCTTCG GCCCCGTCTA 
    CAAGGGCAAC GTCGCCGACA AGGCCAAGCC GGGCCTCAAG GCCCAGCCCA 
    TCGCCGTCAA GCTCTGGGAC CCCGAGGGCG CCCAGGGTCA CAAAGAATGG 
    CTGTCGGAGG TGATCTTCCT TGGGCAGCTC AGGCACCCCA ACCTGGTGAA 
    GCTCATCGGC TACTGCTGCG AGGACGAGCA CCGCCTGCTC GTCTACGAGT 
    ACATGGCCAA GGGCAGCCTC GAGAACCACC TCTTCAAGAA GTTTCCTTCG 
    ATGCTGTCGT GGTCAACCCG GTTGAACATC GCGGTTGGCG CCGCCAAGGG 
    CCTCGTCTTC CTTCACGACG CCGAGAAGCC CGTCATCTAC CGCGACTTCA 
    AGACCTCCAA CATCCTACTC GACCCGGAGT ACAAGGCGAA GCTGTCGGAC 
    TTTGGGCTGG CCAAAGATGG GCCGGAGGGC GACGACACCC ACGTCTCCAC 
    ACGCGTCATG GGCACCCACG GCTACGCCGC ACCGGAGTAC ATCCTCACCG 
    GTCACCTTAC AGCAAAGAGC GACGTATACA GCTTTGGTGT CGTTCTGCTA 
    GAGATCCTAT CCGGGCGACG GGCTGTGGAC AAGACACGAC CTAGCAGGGA 
    GCAGCATCTA GTCGAACACA TGCGCTCCTG GCTCAAGGAT CCACAGAAGT 
    TAAGCCGAGT CATGGACCCG GCCCTGGAGG GCCAGTACTT CGCTACCGCG 
    GCTCATAAGG CGGCCCTGGT GGCGTATAAG TGCCTGAGCG GTAACCCCAA 
    AAATAGACCG GACATGTGTC AAGTCGTGAA AGACCTAGAG CCCCTCCTCA 
    ATGTCACCGA TGATGTCTCT GATGAGTCGG TGGCACCCAT AGCCCCGGTA 
    AGGGAGGATA ATGCTGTGAG AAAGGAAAGA ACAGCAAGGA GAAGGCCCGG 
    TGAGAGGGAT GGTGGAAAAC TTAGGCAAAG TAAAATGCGT TCACCCCAGA 
    AGGTCGTTAG GAGACGTCCA GGCCAAAGCG AGGAGTTTTG GGTGTGGCAT 
    ATGCCTGGAG AAGTAAAATG CTAAATATCA AGTGTAATAT ATATATATCC 
    GTAACCCGCA ATGTAATGTT TTTGTGTAGT GACTGATGAT GAGGATGTAA 
    AATGTAGATG GTGGTGCAGC CGGTGGTCAC TGGCCAGGAA GGATTGCACC 
    CCCTGTAATT CCTTGTTTCT TTTCTCTTGG TTTGAAATTT ATTGGTCTTG 
    GCCTCTTTGT ACCC

    Gene models with high sequence identity

    1. AT2G05940.1 [+] show detail - Protein kinase superfamily protein
      E-value: 3e-130; Score: 462.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 7.6e-79
    HMMSmart Serine/threonine-protein kinase domain 2.4e-35
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.5e-31
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 1.5e-22
    Gene3D no description 7.7e-50
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.6e-45
    ProfileScan Protein kinase, catalytic domain 38.52
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.6e-153

    See the detailed result >

    AT2G05940.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G35580.1); Has 113425 Blast hits to 112177 proteins in 3510 species: Archae - 99; Bacteria - 13130; Metazoa - 41743; Fungi - 9248; Plants - 32526; Viruses - 361; Other Eukaryotes - 16318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR