K10620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10620

Determination of introduced cDNA(s)

  • J013123F09 - Rice Full-length cDNAs - Original: J013123F09

    full reading [+] show sequence

    Nucleotide sequence: J013123F09 - full reading
    GATGGGCTTC ATTGAAATGT CAATGGTTGA TCCAATTCAA TGTTAGGGTG 
    TTCTCTTCTT TTGGAACTCA AAAGAGAGCG TTGTTCTTGG TGTACCGCTA
    TTTGGTATAG CAGAAATTCA GAATGAGCAT CACCCTATTT TTGCCTCCCT
    ATCCAAGGAA ATCCTCCTCA TCCAAATTGT CTCTCTATTT TTTTTTTTGC
    ATGCTACAGT GAGCTCCCTA TATTTGACTC CTTATATCTC GTCCATCTAT
    ATTTTATCAA TATCTTATAC TATAACCCAA ATCAATGATG TCATGCAACG
    TCAAAAAGGG ATAAGATGCT CCCACATTTA GGGAGTGATA AGGGACGGAT
    AGAGAATGGG ATAGGATATG AGCAAGATAG AGAGTTGGTT GGAGAGTATG
    CCTTCTTTTA TGTGTTAATA TGTTATAGTG GCATTTCGCA ACACAATCCC
    TATTTTGTGT CTTTTTAGAG GACCTATTAG TGGTAATTCA CTAGCAAGGG
    AGACAGCTAA AGAGCAGATC GGGCGGTTGT CCGGGCTCCG AGCTACCATC
    TCCACTACTG AGTACTGACA GTCATCGTCT CATCGATGCC TATAATGTTA
    AAAACCAGTC GATCACCGGA ACGTTATTAG TAACCCGAGC TCAACGGTGG
    TGCTAGCTCC ACCACTGCTA ACTAACAAAC TTAAATACTC TACACTGGTA
    TATATTTCTG AACAGTACCT AGATATAACT ACTACCAATC TGCAAGCAAG
    AAGAATTTAG CGATTTACAG ACTCCAGAGA AGAAAAGATT AATTGTGTGC
    ACAATTGCAC TAGGAATTAC CTGTCTACCT ATTCTAACGA GATGTTATCA
    ATGATCAAGG TATGACATGC ATTGTATGGC TTGCAGGTAT TGACAAAACC
    TATTACTCTG CTGATGAAGC TCTTGTTCTA AAGCAAAAAG CAGAGGACGT
    GGTCCCTTAT TTGAATGACC GGTGTATTTA CTTAGTTGGA ATGATGGGTT
    CTGGCAAAAC TACAGTTGGG AAGATATTAG CTGAAGTATT AGGCTATTCT
    TTCTTTGACA GGTTTGCATT CGTATGATTG TATCTGATGA TGCCAACCTA
    GAATTTGAAG CAACTTCTGT CCATTATTCA GAAATGTTAC TGATGTTTCC
    TCATTATAGC GATAAGTTGG TTGAGAAGGC AGTTGGCATA TCATCTGTTG
    CTGAAATCTT TCAGCTCCAT AGTGAAGCAT TCTTCAGAGA TAATGAGGTA
    TACGCTTGTT TCTCTAGAGA CATGAGACTT ATTTCCATTT CTTTTCTTGG
    TATGAAAAAT GAATCAGAAT CCAAGCCATT CTCTTCCCAT CTTGGTCTAG
    TAGTGGCGGG TATATAACGA TGCTATTCAA GCTCCTGATA AGAAAGTTTT
    CTGATATCCT CTTGTTTCAT TGGACTTCTC AAGAGTGAGG TACTAAGGGA
    TTTGTCGTCA ATGCATCGAT TAGTTGTTGC AACCGGAGGT GGTGCGGTGA
    TCCGACCAAT CAATTGGTAC TGGAAGTGAT AAACTACCCT GAATTGCTCT
    TCAAAAGCAA TGCTTACTAA GTTTGCTGTG TGAAATTTGC AGGAGTTACA
    TGAAGAAAGG GTCAACAATC TGGTTAGATG TTCCATTGGA TGCACTTGCA
    AGACGAATTG CTGCAGTAGG AACTGCTTCT CGGCCCCTCT TGCATCAAGA
    ATCTGGTGAT CCTTATGCAA AGGCTTATGC AAAACTGACT GCACTTTTTG
    AACAAAGAAT GGACTCATAT GCTAATGCTG ATGCCAGGGT TTCACTCGAA
    CATATTGCAG TGAAACAAGG ACATAGTAAT GTGACGACAC TTACACCAAG
    TGCCATTGCT ATTGAGGCAT TGCTAAAGAT GGAGAGCTTT CTTACTGAGA
    AGGCAATGAT CAGAAACTAA CCACTTTTGG GTGGTTAAAA GCACATCAAC
    AAACAAAATC TCTTGTTTGT TCTGTTGTAT TTATCGCATA TACCTAAGGC
    GTGTTTCTTA GTATAGCATG AACTTGTTAG TCACCCAGTA TGAAGGAGGG
    TGATTTGAGT TTGAACTTGT GTAAATGGAT AAGTAATAGC TTTCAATTGA
    AAGAAAAGTT TGTGTTGTGT TTTGTGC

    Gene models with high sequence identity

    1. AT2G21940.4 [+] show detail - shikimate kinase 1
      E-value: 1e-35; Score: 43.50

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.000000011
    superfamily P-loop containing nucleoside triphosphate hyd 0.00000000000087
    HMMPanther SHIKIMATE KINASE 0.000000000026
    HMMPanther SHIKIMATE KINASE 4.9e-39
    HMMPfam Shikimate kinase 0.00000096
    HMMPfam Shikimate kinase 0.0000000091

    See the detailed result >

    AT2G21940.4

    Model type
    Protein coding
    Short Description
    shikimate kinase 1
    Computational Description
    shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7757 Blast hits to 7757 proteins in 2385 species: Archae - 26; Bacteria - 5408; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR