K10620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10620

Determination of introduced cDNA(s)

J013123F09 - Rice Full-length cDNAs - Original: J013123F09

full reading [+] show sequence

GATGGGCTTC ATTGAAATGT CAATGGTTGA TCCAATTCAA TGTTAGGGTG 
TTCTCTTCTT TTGGAACTCA AAAGAGAGCG TTGTTCTTGG TGTACCGCTA 
TTTGGTATAG CAGAAATTCA GAATGAGCAT CACCCTATTT TTGCCTCCCT 
ATCCAAGGAA ATCCTCCTCA TCCAAATTGT CTCTCTATTT TTTTTTTTGC 
ATGCTACAGT GAGCTCCCTA TATTTGACTC CTTATATCTC GTCCATCTAT 
ATTTTATCAA TATCTTATAC TATAACCCAA ATCAATGATG TCATGCAACG 
TCAAAAAGGG ATAAGATGCT CCCACATTTA GGGAGTGATA AGGGACGGAT 
AGAGAATGGG ATAGGATATG AGCAAGATAG AGAGTTGGTT GGAGAGTATG 
CCTTCTTTTA TGTGTTAATA TGTTATAGTG GCATTTCGCA ACACAATCCC 
TATTTTGTGT CTTTTTAGAG GACCTATTAG TGGTAATTCA CTAGCAAGGG 
AGACAGCTAA AGAGCAGATC GGGCGGTTGT CCGGGCTCCG AGCTACCATC 
TCCACTACTG AGTACTGACA GTCATCGTCT CATCGATGCC TATAATGTTA 
AAAACCAGTC GATCACCGGA ACGTTATTAG TAACCCGAGC TCAACGGTGG 
TGCTAGCTCC ACCACTGCTA ACTAACAAAC TTAAATACTC TACACTGGTA 
TATATTTCTG AACAGTACCT AGATATAACT ACTACCAATC TGCAAGCAAG 
AAGAATTTAG CGATTTACAG ACTCCAGAGA AGAAAAGATT AATTGTGTGC 
ACAATTGCAC TAGGAATTAC CTGTCTACCT ATTCTAACGA GATGTTATCA 
ATGATCAAGG TATGACATGC ATTGTATGGC TTGCAGGTAT TGACAAAACC 
TATTACTCTG CTGATGAAGC TCTTGTTCTA AAGCAAAAAG CAGAGGACGT 
GGTCCCTTAT TTGAATGACC GGTGTATTTA CTTAGTTGGA ATGATGGGTT 
CTGGCAAAAC TACAGTTGGG AAGATATTAG CTGAAGTATT AGGCTATTCT 
TTCTTTGACA GGTTTGCATT CGTATGATTG TATCTGATGA TGCCAACCTA 
GAATTTGAAG CAACTTCTGT CCATTATTCA GAAATGTTAC TGATGTTTCC 
TCATTATAGC GATAAGTTGG TTGAGAAGGC AGTTGGCATA TCATCTGTTG 
CTGAAATCTT TCAGCTCCAT AGTGAAGCAT TCTTCAGAGA TAATGAGGTA 
TACGCTTGTT TCTCTAGAGA CATGAGACTT ATTTCCATTT CTTTTCTTGG 
TATGAAAAAT GAATCAGAAT CCAAGCCATT CTCTTCCCAT CTTGGTCTAG 
TAGTGGCGGG TATATAACGA TGCTATTCAA GCTCCTGATA AGAAAGTTTT 
CTGATATCCT CTTGTTTCAT TGGACTTCTC AAGAGTGAGG TACTAAGGGA 
TTTGTCGTCA ATGCATCGAT TAGTTGTTGC AACCGGAGGT GGTGCGGTGA 
TCCGACCAAT CAATTGGTAC TGGAAGTGAT AAACTACCCT GAATTGCTCT 
TCAAAAGCAA TGCTTACTAA GTTTGCTGTG TGAAATTTGC AGGAGTTACA 
TGAAGAAAGG GTCAACAATC TGGTTAGATG TTCCATTGGA TGCACTTGCA 
AGACGAATTG CTGCAGTAGG AACTGCTTCT CGGCCCCTCT TGCATCAAGA 
ATCTGGTGAT CCTTATGCAA AGGCTTATGC AAAACTGACT GCACTTTTTG 
AACAAAGAAT GGACTCATAT GCTAATGCTG ATGCCAGGGT TTCACTCGAA 
CATATTGCAG TGAAACAAGG ACATAGTAAT GTGACGACAC TTACACCAAG 
TGCCATTGCT ATTGAGGCAT TGCTAAAGAT GGAGAGCTTT CTTACTGAGA 
AGGCAATGAT CAGAAACTAA CCACTTTTGG GTGGTTAAAA GCACATCAAC 
AAACAAAATC TCTTGTTTGT TCTGTTGTAT TTATCGCATA TACCTAAGGC 
GTGTTTCTTA GTATAGCATG AACTTGTTAG TCACCCAGTA TGAAGGAGGG 
TGATTTGAGT TTGAACTTGT GTAAATGGAT AAGTAATAGC TTTCAATTGA 
AAGAAAAGTT TGTGTTGTGT TTTGTGC

Gene models with high sequence identity

AT2G21940.4 [+] show detail - shikimate kinase 1
E-value: 1e-35; Score: 43.50

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.1e-08
superfamily	P-loop containing nucleoside triphosphate hyd	8.7e-13
HMMPanther	SHIKIMATE KINASE	2.6e-11
HMMPanther	SHIKIMATE KINASE	4.9e-39
HMMPfam	Shikimate kinase	9.6e-07
HMMPfam	Shikimate kinase	9.1e-09

See the detailed result >

AT2G21940.4

Model type: Protein coding
Short Description: shikimate kinase 1
Computational Description: shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7757 Blast hits to 7757 proteins in 2385 species: Archae - 26; Bacteria - 5408; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).
Link: InterPro Scan - TAIR