K10632

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10632

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10632

Determination of introduced cDNA(s)

  • J023011G21 - Rice Full-length cDNAs - Original: J023011G21

    full reading [+] show sequence

    Nucleotide sequence: J023011G21 - full reading
    GTAGGAATTG AAGGATGATG CTGCTCGCCA AGGAGTTGGG CCTGTCGCCG 
    CCGGCAGCGG TCACTCCTCG CCGGAGGCCG CCGCCTGCCA GGGTCCCCGC
    CTCTCCCTCC GGTGGCTCGC CCGTGGCCGT CGGAGACCTC TGGCTCCGGA
    CCAAAGGAGC CGGAGGAGGA GGAGACGGGT TCGGGAGCCA CAGCCACGAG
    AGCGAGATGG ATTTGGCCAT GCTCGTCACC GACTTCCTTG AGAACGGCGG
    CACCGGAGGC GCCGATTCCC GCGCCAGCAG CGACTCCGAC TCCGCCCTCT
    CCGACCACCT CGCCGATAAC ATTTCTATCT ACAAGCAAGG CGGCGATGAG
    AAAGAAAACG AGCTACTCTC CATGGTCCAC TCGCTGTTAT TCTCGATCCA
    TGAGTCAGAC CTTCTGGCTT TCAAAAGAGG TCAATGCAGT GCCAGCTGCA
    TCCGTCATTT ACTTGTGAAG CTCTTGAGAT ATTCGGGATA TGATGCAGCT
    GTTTGCGTAT CAAAATGGCA GGGATTCGAC AAGATACCTG GAGGTGATCA
    TGAGTATATC GATGTCATCA TGAATAGTGA TACTGAATAT CGTCTGATCA
    TTGATATCGA CTTCAGGAGC CACTTTGAAA TAGCCAGGGC TGTTGATTCT
    TATGACAGTC TGCTCAATTC ACTTCCGGTG GTCTATGTTG GCACTCTTCC
    CAGACTGAAA CAGTTCTTGC ATGTTATGGT AGATGCTGCA AAATGGTCGC
    TTAAGCAGAA CTCTATGCCT CTGCCTCCTT GGAGATCCTT GCCTTATCTC
    CAAGCAAAAT GGCATTCCAA GTATGAGAGG ATAGACCTGC ACATTGAGCA
    AGACTTCCGC AGCACAGCTT CAGATCACGC ACTATGCATT GGGCACCTCA
    AAAGGCTGAA ATCCTCCCTG CAGTCAGAAC TGGATACCGA AAGGTTGCTT
    ATGATGCCAA TCAAGACTGA TATGAAGCGG AGGGCAAAGT TTGAGAGGCG
    GCGGCGCCGT TCCTTGCTCA GCTTCTGATT CATATTTGTG CTTCTTGGAT
    ACTGAAGTAC TGAGAGAAGG AAGAATAGCT TCCCATACTT TTTTTCTGTG
    ATAAAAGGAG TTCTTTTTAA CAGTTTTGGA CATACAAGGG AAATAGATGA
    CGGGTACTAA CAAGGCAGGA GAGTTGAGAG AGTGTGCCAG CTTTTTTTTG
    AAGGCATATA CAAAAACATA AAATTCTTTT TGGATTTCAT TTTTGTTCTT
    CCGGCGATGA TGGCTGCTAG TGGTTAATCT GCTGCATACC ATGTACAATG
    ATGAGTGTTT ACAGCGTTTT TTTCCTCCTT ATATTCATTC TTTTATCACA
    TAGATGGACC TTGTGTATTT TGAACACACT TCCTTTTCCC CCTTGTTGTA
    GAGTGGACAT GATACATGCT GTTGGTTCCC TTTGTAATAA TAGAATGTTC
    AAGCTTAGTT ACACTCTGTT TTGAAATGAT ATACTCTAAA ATGTTCTGGC
    TT

    Gene models with high sequence identity

    1. AT2G39650.1 [+] show detail - Protein of unknown function (DUF506)
      E-value: 1e-67; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF506, plant 1.4e-60
    HMMTigr Protein of unknown function DUF506, plant 7.7e-71

    See the detailed result >

    AT2G39650.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF506)
    Computational Description
    Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT2G38820.2); Has 395 Blast hits to 393 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR