K10633

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10633

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10633

Determination of introduced cDNA(s)

  • J013000L07 - Rice Full-length cDNAs - Original: J013000L07

    full reading [+] show sequence

    Nucleotide sequence: J013000L07 - full reading 
    GGTTTTTCCC ACTCCCCTCT ATCCACTGTT TCCGCCGCCG CCGCCGCCGC 
    CGCCGCCGCC CGCCGCGCCG GCGTTCTCCC CCCGCCGACG AAGCACGGCG 
    TGGAGTGTAG ACGCAGCCTC CTCGCTCTCT CTCACGCCGG CGAGCAGGGT 
    CTGGAGCCAG GAGCGACGCG GCGGCCGGGG CCGGGGCCTC CATCTCGGTT 
    CGAACCGCAC TGAAGGTCCC TCCCTGCATT AGGGCGCACA ATGGCACTGA 
    CCCTTCTCAG AGGGATGCGA ACGCCGGTTG TAGCTAGAAG GAATGCTGGC 
    TTGTTCTTCA CCACATTGCA GTCTCCGTTG TTGTCCCGCT TCACGATGAG 
    AGCGGAGAGC GCGCGGGCCG CAGCGCCCAA GTCGATTCAG CTGGCGACCA 
    AGGAGGCGGC GGAGCAGAAG GCGCAGGGCT TCGAGGCGGT CATCGGGATC 
    GAGACCCATG TCCAGCTCTC GACGGTCACA AAGGCGTTCT GCTCGTGCCC 
    GTACAGCTAC GGGTCGCAGC CGAACAGCAC CGTCTGCCCC ACCTGCATGG 
    GGCACCCCGG AACGCTGCCC GTTCTTAACG CAAAGGTTGT CGAATGCGCC 
    GTGAGGTTGG GCCTCGCTCT CAATTGCGAG ATCGCGATGA CGTCCAAGTT 
    TGATCGGAAG CAGTACTTCT ACCCGGACCT GCCCAAGGGG TATCAGATTT 
    CGCAGTTTGA CATTCCCATT GCCAAGGAGG GTTACCTTGA TTTGGATCTT 
    CCGGTGGAGT TCGGCGGTGG GCATAGGAGA TTTGGGGTCA CAAGGGTGCA 
    TATGGAAGAA GATGCTGGCA AGCTGCTTCA CTCTGAATCC GGGAGTTACT 
    CTCAGGTTGA CTTAAATAGG GCTGGCGTTC CTTTACTTGA AATTGTCTCA 
    GAGCCAGATA TGAGAACAGG GATAGAGGCT GCCGAGTATG GTGCTGAGCT 
    ACAGAGGCTT GTTAGGTACC TGGGCGTGAG TAATGGTAAC ATGCAGGAAG 
    GTTCCCTTCG CTGTGATGTG AATGTTTCTG TTCGGCCAAT TGGACAATCA 
    AATTTTGGTA CAAAGGTTGA AATAAAGAAT ATGAATTCAT TTTCTGCAAT 
    AAGTAGGGCA ATAGATTATG AGATCTCCCG GCAGATTCTT CTTCATAAAG 
    AAGGTCAGGC TGATCAAATT GTACAAGAAA CCCGGCTGTG GGATGAATCT 
    TCTCAGAAAA CTTTTACAAT GCGAAAAAAG GAGGGACTTG CTGATTATAG 
    ATATTTTCCT GAGCCTGATC TTCCTGAAGT TGTTCTTACT AGTGAGTACA 
    TTGATGAAAT TCAAAACTCA ATGCCAGAGC TTCCTGAAGC AAAGCGTAGG 
    CGCTTCGAGA ATATGGGACT CAGCATGCAA GATGTTCTTT TCCTTGCTAA 
    TGACGATAAT GTTGCTCGGT TCTTCGATTC TACCCTTGAG CACGGCGCGG 
    ATGCAAAGCT GGCTGCCAAC TGGATCATGG GTGACATTGC TGCTTATTTG 
    AAAAATGAAA AACTTTCCAT TGATGAAATT AAATTAACAC CTCTGGAGCT 
    TTCTGAATTG ATTGCATCTA TAAGGAATGG AACTATCAGT GGGAAGATTG 
    GAAAGGAGAT TCTGATTGAA CTCATTGCGA AAGGTGGAAC TGTCAAGTCT 
    GTGATAGAGG AGAAAGATTT GGTTCAGATA GCAGATCCTG CAGCAATTGA 
    GGCAATGGTA GATCAAGTAT TAGCTGATAA TCCAAAGCAA CTTGAGCAGT 
    ATCGGTCCGG GAAAACTAAA TTGCAAGGAT TTTTTGCTGG CCAGGTGATG 
    AAAGCATCAA AGGGTAAAGC TAATCCTGTT TTGTTGAACA AAATCCTCGG 
    GGAGAAATTG AAGGCCAATA GTTGAGGGGG TTTGTCGACA AACGGAGACT 
    CATGTTGTAG TCCACGAGTG GACAATCGAA CTAAACCCTG CAATTTGGGG 
    TCTATTTTTC AATG

    Gene models with high sequence identity

    1. AT1G48520.1 [+] show detail - GLU-ADT subunit B
      E-value: 0; Score: 782.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Glutamyl-tRNA(Gln) amidotransferase, B subunit 2.6e-183
    HMMPfam Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal 7.2e-121
    HMMPfam Asn/Gln amidotransferase 1.1e-50
    HMMPanther Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E 6.6e-189
    superfamily Aspartyl/glutamyl-tRNA amidotransferase subunit B-related 2.5e-27
    HAMAP Glutamyl-tRNA(Gln) amidotransferase, B subunit 37.301
    PatternScan Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site 0
    HMMSmart Asn/Gln amidotransferase 2.7e-71

    See the detailed result >

    AT1G48520.1

    Model type
    Protein coding
    Short Description
    GLU-ADT subunit B
    Curator Summary
    Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).
    Computational Description
    GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 9064 Blast hits to 8884 proteins in 2422 species: Archae - 562; Bacteria - 4430; Metazoa - 127; Fungi - 129; Plants - 54; Viruses - 0; Other Eukaryotes - 3762 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR