K10637

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10637

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10637

Determination of introduced cDNA(s)

  • J033063H10 - Rice Full-length cDNAs - Original: J033063H10

    full reading [+] show sequence

    Nucleotide sequence: J033063H10 - full reading
    GATCCGACTA TGCTGTTCTG CACTGGCGCA CGGCACCAAA TAAAAGCCTC 
    GGCTCGCCTC GAGCTGTCCC CCCATCCCCC AACTGGAGAG TAGTAGATCG
    ATTCGATCCA CCCTCCGATT CCTTTACCGA ACCGTGGGGG AAATCCGCGC
    CGGGGATGTC GTCGTCGGTC GGAGGCGGAG GGGGAGGTGG CGCGGGCGGC
    GGCGGCGGTG GCGGAGGAGC GGACATTGCG AGCCTGCTGG ATAAGGCCAA
    GGAGCTGGAC CAGCTGCGCA AGGAGCAGGA CGAGGTGGTC ACCGAGATCA
    ACAAGATGCA CAAGAAGATC CTCTCCTCTC CAGAGATGGT TGATAAACAG
    GTTGATGCTA CGTTGATTCG GCTTCGTGCT TTATATACAC GTGCCAAAGA
    ACTTTGTGAG AGTGAAGTCA GTGCATCGTC TGCTTTGGTT GGACTATTGG
    ATGGTTTGTT GCAATCTGGA ACTTCAGCTG CACAACGAAA AAAGATAGAA
    GTTGGTGAGC AGAAAAAGAA GAGGATGAAG TCTGATACAG ATACTACACG
    ATTCTCCTCT GCATCTATGA GGAGCCAACT TGACCAAGCT ACAAACCTGA
    AAGGAGAACA GGTTGCAGCT AAGGTCAAAT CAGACGAAGA AAAAGATGAA
    TGGTTTGTGG TGAAGGTGAT ACATTTCGAT AAGGAAACAA AAGAATATGA
    GGTACTTGAT GAGGAGCCAG GTGACGATGA AGAGAGTGCC CAAAAGAAGT
    ACAAGTTGCC TATGTCAGAT ATTATTCCAT TTCCAAAGAG AGGGGATCCT
    TCCAGTGCCC CAGATTTTGG GCAGGGTCGA CAAGTCTTAG CTGTTTATCC
    TAGCACAACA GCACTATATA GAGCTACTGT TGCCTCTAAT CGTAAGAGGA
    AATCTGACGA TTATCTACTC TTGTTTGATG ATGACGAGGA GGATGGAAAT
    CTACCACAAA GAGCTGTGCC GTTCTATAGA GTGGTTCCTC TCCCGGAGGG
    CCACCGGCAG TGAAAATCTC AGTTGGATCC GTCTTTACCC CGGCCAGTGT
    AGTGTGTGAA GATAGGAGTG TGAGAGTGTC TGCCTGACAA TGTAGTAATT
    TTGTTTTATC TGCACCTTGT CCGCAGCATG CAGATTGTAC TACCAAAGTG
    ACTTCTAAGA TGTCCAAGGT TCAGCGATCA TGTAAATAGG TTGATTCAGT
    GTTGCTCTAT AACAAAAATA AGTGATTTCC CCTTCG

    Gene models with high sequence identity

    1. AT3G27460.1 [+] show detail - SGF29 tudor-like domain
      E-value: 3e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR21539 1.50000306971087e-26
    HMMPfam DUF1325 1.99999999999999e-36

    See the detailed result >

    AT3G27460.1

    Model type
    Protein coding
    Short Description
    SGF29 tudor-like domain
    Computational Description
    SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 319 Blast hits to 319 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 112; Plants - 46; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR