K10643

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10643

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10643

Determination of introduced cDNA(s)

  • J033125G22 - Rice Full-length cDNAs - Original: J033125G22

    full reading [+] show sequence

    Nucleotide sequence: J033125G22 - full reading 
    TAGAACCAGG CGATTGCGGC TTCGTCGCTC GTCCTGCCGC TTCCGCCGCA 
    TCCTGGTGAG CACATCCTCC GCCACCGCTG CCTGCTCCGA TCCCCATTCA 
    TCGCGCGAGC GAGTACGGCT TCGTCGCTCG TCCTGCCGCT TCCGCCGCAT 
    CCTGGTGAGC ACATCCTCCG CCACCGCCGC CTGCTCCGAT CCCCATCCAT 
    CGCGCGAGCG AGCGAGGGTC GCCGTCGCTC ATCCTGCTGC TTCCGCCGCA 
    TCGACAAGAT GCCAAATAGA GCCACGCATT GGTGTTATGC CTGCCGACGT 
    CCAATTCGTG TTAGTGGACA AGATATTACA TGCCCCAACT GCAATGATGG 
    TTTTATACAA GAAATCAGTG AGATAGGTGG TTCATTGAAC ACTTATGGTA 
    TCTTTGACCC GAGCTTTGAT GAGCGTCGAG ATAGAAGTTT TGGAATGGTG 
    GAGGCTATGT CTGACCTTAT GCGACAACGG ATGGCAGAAA TGGGCAGAAA 
    TCGTGTGTTG GATTTCCATG GTACGAGAGG GGCAAGTTCC CATCAAGGAA 
    GGCAGCCAAC TGTTAGACCA ATGCTCATAT TTGGCAGCAA TGCACCTGAT 
    CGTGTAAGCA GCAGTAGTGA AGAAGCAGAT ATACTCCTCA GGCAAGGCCG 
    CAGAATTGGC GCGGACCGTC CAAATTTCAG TCGTTTCCTA GTCGGTCCCA 
    GTCTTGAAGC TCTATTCGAA CAGCTGCTCC TGCATAATAA CCGTCAAGGA 
    CCACCACCAG CTCCACAGTC TGCAATTGAC TCCATGCCTG TGGTAAAGAT 
    AAACCTCAGG CACCTTAGAG ATGATCCTCA CTGTCCAGTT TGCACAGACA 
    AATTTGAGGT TGGAACAGAG GCACGGGAGA TGCCATGCAA GCATCTGTAC 
    CATGCTGAAT GCATCATTCC CTGGCTGGTT CAGCACAATT CTTGTCCAGT 
    TTGCCGCCAT CCACTGCCGT CATCTTCCCA CCGTTCAGGC AGCACCCGTT 
    CATCGTCAAC CCACTCTAAC GAAGCTATTA GCCATGGGGT TGCCAGATCT 
    GATGCTGATC CTGTTCCTGT TGCAAGAAGC GACGACAGCA GAAACCATGA 
    AATGCACGGT TCTTTCTCGT TTCTCTGGCC ATTTGATTCA CCTACTCCTG 
    ATTCCAGTTC CTACACGCAC GAAGGAGGTG TTGGTGAGCC TACAGTTCAT 
    GACGATGCTG GCCAGATGAC CTATTCTGAG TGGCATTACG ACTACTGAAC 
    TTCCTGCAGC AAGACCCCCC AACATATCAG TGTCCACTCC TCTTGGCTTC 
    AACCTCTTAA AGAGGAGGTG GATAATTTAT GGGTGTCGTG TTGGGTGTGT 
    GAGGCTTTCG CCTAGAACAA ACCTTGTGTT GCATGTGCCG TTCTATCCCA 
    TATGCTGGGG CTGTGTATAA CTGTACATCA ACTATTGAGC AATGAGCTAT 
    ATGCTGTACT GCCAGGGATG CTATGGTAAA CTACAAGTGA ATATGTGATA 
    TGTCTGACC

    Gene models with high sequence identity

    1. AT2G40830.3 [+] show detail - RING-H2 finger C1A
      E-value: 4e-59; Score: 226.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING ZINC FINGER PROTEIN 8.3e-39
    ProfileScan Zinc finger, RING-type 12.032
    HMMPfam Zinc finger, C3HC4 RING-type 0.000014
    superfamily RING/U-box 0.000000000000002
    Gene3D no description 0.00000000000065
    HMMSmart Zinc finger, RING-type 0.0000025

    See the detailed result >

    AT2G40830.3

    Model type
    Protein coding
    Short Description
    RING-H2 finger C1A
    Curator Summary
    Encodes a putative RING-H2 finger protein RHC1a.
    Computational Description
    RING-H2 finger C1A (RHC1A); FUNCTIONS IN: zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR