K10707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10707

Determination of introduced cDNA(s)

  • J023038E16 - Rice Full-length cDNAs - Original: J023038E16

    full reading [+] show sequence

    Nucleotide sequence: J023038E16 - full reading 
    GAAATCAAAT TAAATTTCTT AATTATAGCG GCTGCTTTAT GCTTTTACCA 
    CCTCCGAAAC TTATCAGCTT ATGATCACAA TACATTTCCT GCGAAATTCG 
    ATCGCGTGTG TGGATCGTAG TACACTCATA CAAACTGTCA TGCACAAGCT 
    ATGTTAAAAC AAACAATCGA CCGTACGTTG GGTATATAGA CGATACAACG 
    ACGCTCGCGT GGATGACGCC GCCGATCACC GGAGCGTGGC GAACGCGCCG 
    CCGCGCATCA TCTGCTTGAA CTCGAGGAAG TCGACGCGGC CGTCGCCGTC 
    CCTGTCGACC TGGCCGATCA TGCGGCCGCA GTCCTCCGCC GTCCGGCCCT 
    GCTTGATCCC CAGCGACGCC AGCACGGCGC CCAGCTCGTC CACGGTGATG 
    AACCCGTCGC CGTTCCGGTC GAACACGTCG AACGCCTCGC GCATGCTCGC 
    CTCATCCACG TCGCAGGCGC CGCCGCCGCC GCCGCCGCCG CCGTCGACGC 
    GCATGACGGT CTCGTACAGC TGGGTGAACT CGTCCATGTC GACGCACCCG 
    TCGCCGTTGG CGTCGATGCG GGCGATGGTG GCGGCGAGCT CCTCCCTGTG 
    CACGGGCATC CCGAGCCTCT CCAGCGACTC CGTCAGCTCC TCCCGGGTGA 
    TCCGGCCGTC GCCGTCACGG TCGAACAGCT CGAACACCCG CCGGAGCTCC 
    GCCTGCTGGT CGCACGCCAT CCCCTCGCCG CCGGCCGGCG CCCGCCGCCG 
    CTAGCTGGTG GTGCAGCCGG CTGCACGTAC GGCCACAGGG GAGCGTGTGG 
    GAGGGAGGCG TCGGAGGCCG CGGTGGTGGT GGTAGTGGGA TC

    Gene models with high sequence identity

    1. AT4G03290.1 [+] show detail - EF hand calcium-binding protein family
      E-value: 7e-36; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    superfamily EF-hand 6.2e-42
    HMMPfam EF-hand 9.1e-08
    HMMPfam EF-hand 1.4e-08
    HMMPfam EF-hand 1.7e-06
    HMMPanther CALMODULIN 2 RELATED 4.9e-57
    HMMPanther CALMODULIN 4.9e-57
    HMMSmart Calcium-binding EF-hand 0.00013
    HMMSmart Calcium-binding EF-hand 0.28
    HMMSmart Calcium-binding EF-hand 1.4e-06
    HMMSmart Calcium-binding EF-hand 0.0035
    ProfileScan EF-HAND 2 16.438
    ProfileScan EF-HAND 2 11.11
    ProfileScan EF-HAND 2 16.048
    ProfileScan EF-HAND 2 12.589
    Gene3D EF-hand-like domain 1.7e-33

    See the detailed result >

    AT4G03290.1

    Model type
    Protein coding
    Short Description
    EF hand calcium-binding protein family
    Computational Description
    EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G05990.1); Has 24510 Blast hits to 17278 proteins in 1569 species: Archae - 2; Bacteria - 188; Metazoa - 10458; Fungi - 4683; Plants - 5334; Viruses - 0; Other Eukaryotes - 3845 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR