K10723

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10723

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10723

Determination of introduced cDNA(s)

  • J033023G15 - Rice Full-length cDNAs - Original: J033023G15

    full reading [+] show sequence

    Nucleotide sequence: J033023G15 - full reading
    AAAAAAATTA CGGAAGTGGC CATGCCGAAG CCCACGCGCG CCGTCGACCA 
    CCGGCGGCGG AGGAGCGGGC GAGCTCCGGC GATCGCCGCC GTCGCCGTTG
    CCGCGGAGGA TGATGGCGAG GAGCACCATC TCAATCCGTT CTTGGACGCC
    GCCCCGTCGT CGTCTTCGTC GAGAGTCCAG TTCAGGAAGG TGGCGTCGCG
    CGCGGTGTGG CTGGAGGAGG CTGGTGCGGC GGAGGTTGTG GACAGCAAGG
    GCAAGCTCTG GCTGACCACC GGTGTCAACC GGGACGGCAA GCTGTACTAC
    AATGTCGAGG AGATTGGGTT CTTGGCAGAA AGAGGGGCAT TGGTTCTTCT
    TGATTACGAG GGTGAAACAA TTGGAATGGA GGAAATCTAC GGAAAGATTG
    CTGGAGGGAA ATATGGGTGC TCCTGGGATG CCTTCCAAGC TTACAAGCAC
    TTGAAGTTGC TCGGCTATAT TATTGGACGA TATGGCGTTC CCTGGACAGT
    TAAGCGTAGC CATACTTACA GCGTCACTGA TGCCTCCACA AGTGTGGTTG
    AAACTGATCA GATTCAGAGC TTAAATAGAG TCGGTGGTGC CTCCAATGAC
    ATAACTAAAT TGCTCAAGGA AATGTGCATA GATGATATGC ATCCATCCTT
    TGAAGTGTAT CTACCGAATA GCAAATTTAA GAAGACATCC CCAGGAGACC
    CTAGTTTCGT CCTATGCCTA TTAAGCAACA AACCACCATC AAGGGAAGAA
    CTAGAAACCG TTGAAAACAA GTTTGAGGGC ATTCCTCTGA AATTTTGCCA
    TGTTGACAAC GGACGGGTCA GCTTCCTCTC CTCCAACAAA GCTGCTCTCC
    CTAGTTTGCC CTGATGAGAT AGCAGCAGGA GAATCTGTTA CTGTTAGTTT
    TTTCTGCTTC TGATCTTGTG ACGTACATCA CTTGGTATTA GATGCAATTC
    TGGTGTTCTT GTATAACTTC AGATCAGCAT TAACACTTAC GGAGGATTTT
    TCAGAGGAAT TATTACCGTG TTTTGTCTGC

    Gene models with high sequence identity

    1. AT3G57360.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); ...
      E-value: 9e-49; Score: 191.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G57360.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013001G04 - Rice Full-length cDNAs - Original: J013001G04

    full reading [+] show sequence

    Nucleotide sequence: J013001G04 - full reading
    TATAGTAGCA GTGACCACAC AAGCTTACCT GAGCTTGAGA GCTCAGCATT 
    ATCTTCTCAG TCTTGTTCTC CCTTCACAGT TTCAGATTTA TGCTCTTTGG
    CTGTCAAGAC TCGAGCAGTC TGTTGCCTTC ACCTTGTGCT TATGTTGAGG
    ATAGAGGCTC TGTTGTATTA TCCTGTCACA AGGCCAAGAT GGAAAATTAA
    TGCTAGTCAA GATGCCACGC AAGAAACTGG CCTGATTGAT GCAGAAATTA
    ATTCTTATGC CTATAGTGAA AGGAAGAACA GGAAATACAA CGGCGCCTAC
    ATCGATAAAG ATGGTGTATC AAGGACCTTC GATCGAAAGA AAATATCAAG
    AAAAAGGGGG GGTGCTATGA GAGGCCGGGG CTGGAAGTAT GGCTCTGGTT
    TTGTAGATGG AGTCTTCCCT GTGCTCAGTC CAATGGCACA GGATATCTTA
    GAATTTGTTC AGAAGGGAAC AGACGTTGCA AAAATCTGGG AATCTTTGGA
    TAACATTCCT TCCACACACA ATCTTTTTGA TGATCTTGTG AATGTCGCTG
    TCCAATTCCG TATGAACAAG AAATGGGATC TGATCATTCC ATGGATATAG
    GTCTGCGAGT GGATCCTGTA CAGGAGCTCA TTCCGTCCTG ACATCATCTG
    CTACAACCTG CTCATAGAAT CCTATGGCAA GAAGCGTCAG CTGAACAAGG
    CAGAGTCAAT CTACATGGCT CTTCTGGAAG CTCAGTGTGT GCCAACTGAA
    GACACCTATG CTCTTCTCCT GCGCGCTTAC TGCAACGCTG GATCGCTGCA
    CCGAGCAGAA GGCGTGATCT CGGAGATGCG CGAGCACGGG ATTCCTCCAA
    ATGCTACTGT ATATAATGCT TACTTGGATG GATTACTGAA GGCAAGATGT
    ACCGAAAAGG CGGTCGAGGT GTACCAAAGG ATGAAGAGAG AACGGTGCAG
    AGCTAACACG GAGACATTCA CCCTGATGAT CAATGTGTAC GGGAAGGCAA
    AGCAACCAAT GTCATCGATG AAAGTTTTCA ACGAGATGAA GTCGATTGGG
    TGCAAGCCTA ATATCTGCAC TTACACTGCC CTGGTGAATG CATTTGCGAG
    GGAAGGCCTG TGCGAGAAGG CTGAAGAAGT GTTCGAGGAG ATGCAGCAGG
    CAGGGCACGA GCCTGACGTG TATGCTTACA ATGCCCTCAT GGAAGCTTAC
    AGCCGCGCTG GATTGCCGCA AGGCGCATCG GAGATCTTCT CCTTGATGCA
    GCACATGGGG TGTGAGCCTG ACAGAGCTTC ATACAACATC TTGGTAGATG
    CATATGGAAG AGCCGGCCTT CATGAAGATG CGGAGGCGGT GTTCGAGGAG
    CTGAAGCAGC GGGGGATGTC GCCGACGATG AAGTCCCACA TGCTGCTGCT
    GGCGGCGCAC GCCAGGTCCG GCAACGCGAC GAGGTGCGAG GAGGTGATGG
    CGCAGCTGCA CAAGTCCGGC CTCACCCCGG ACACCTTCGC GCTGAACGCC
    ATGCTCAACG CCTACGCCCG CGCCGGCCGC CTCGACGACA TGGAGCGCCT
    CTTCGCCGCC ATGGAGCGCC GCGGCGACGC CGACGTGGGC ACGTACAACG
    TGGCGGTGAA CGCGTACGGG CGCGCCGGGT ACGTGGGGAG GATGGAGGCG
    GCGTTCGCGG CGGTGGCGGC GAGGGGGCTC GCCGCCGACG TGGTGACGTG
    GACGGCGAGG ATGGGGGCGT ACGCGAGGAG GAAGGAGTAC GGGCGGTGCG
    TGGGGATGGT GGAGGAGATG GTGGACGCCG GCTGCTACCC GGACGCCGGC
    ACGGCGAGGG TGCTGCTGGC GGCGTGCTCC GACGAGCGCC AGGTGGAGCA
    GGTCACCGCC ATCGTCAGGT CCATGCACAA GAAGCCCAAG ACACTCTTCA
    CCATATAATA ATAAAAAAAA ACCCAACACT TTGCATATAT AATTGCATTA
    TTATTACATG TATAATAATA CAGTATAAAT GTACATTACA ATACTACCTT
    AGTTTTCTTT TAATGTATGC CGCCATTAAT TCTAAAGTAG CGGCTAACCA
    TTCAAAAAAA AACAAAAAAA AAACG

    Gene models with high sequence identity

    1. AT2G35130.2 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 673.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pentatricopeptide repeat 1.2e-05
    HMMTigr Pentatricopeptide repeat 1.9e-08
    HMMTigr Pentatricopeptide repeat 3.9e-07
    HMMTigr Pentatricopeptide repeat 4.3e-07
    HMMTigr Pentatricopeptide repeat 1.2e-10
    HMMTigr Pentatricopeptide repeat 4.5e-09
    HMMTigr Pentatricopeptide repeat 4.2e-09
    HMMTigr Pentatricopeptide repeat 0.012
    HMMTigr Pentatricopeptide repeat 0.0014
    HMMTigr Pentatricopeptide repeat 0.014
    HMMTigr Pentatricopeptide repeat 3.9e-07
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.1e-122
    superfamily TPR-like 3.8e-26
    superfamily TPR-like 1.5e-07
    HMMPfam Pentatricopeptide repeat 0.0056
    HMMPfam Pentatricopeptide repeat 3.7e-05
    HMMPfam Pentatricopeptide repeat 4.4e-05
    HMMPfam Pentatricopeptide repeat 2e-06
    HMMPfam Pentatricopeptide repeat 6.2e-09
    HMMPfam Pentatricopeptide repeat 1.8e-06
    HMMPfam Pentatricopeptide repeat 5.8e-08
    HMMPfam Pentatricopeptide repeat 4.8e-06
    HMMPfam Pentatricopeptide repeat 0.0032
    ProfileScan Pentatricopeptide repeat 10.095
    ProfileScan Pentatricopeptide repeat 12.101
    ProfileScan Pentatricopeptide repeat 10.238
    ProfileScan Pentatricopeptide repeat 11.433
    ProfileScan Pentatricopeptide repeat 13.055
    ProfileScan Pentatricopeptide repeat 12.551
    ProfileScan Pentatricopeptide repeat 13.23
    ProfileScan Pentatricopeptide repeat 10.961
    ProfileScan Pentatricopeptide repeat 7.783
    ProfileScan Pentatricopeptide repeat 9.92
    ProfileScan Pentatricopeptide repeat 5.36
    ProfileScan Pentatricopeptide repeat 6.138

    See the detailed result >

    AT2G35130.2

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1).
    Link
    InterPro Scan - TAIR