K10726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10726

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10726

Determination of introduced cDNA(s)

  • J023036L18 - Rice Full-length cDNAs - Original: J023036L18

    full reading [+] show sequence

    Nucleotide sequence: J023036L18 - full reading 
    GGTGTTTCCA TTGGAATGGA ATGGATGGGG ATAAGTGAAA AATCAAAAAG 
    GGCATGGCAA TTGGTGGGTT AGAACTGAAC TGTGAGGAGC TTCAGAGACT 
    ATGGAGCAAG GTGTAGCTGG AGAAAACGTG TACAACACAG AGAGACTGCA 
    CAGCTACGGA AGTGGTAAAC ACCAGTGCTA GTATATGTAT GGATTGAAGG 
    TAACGTAGCA TTTGCCTTCA CCACAACTCT GCAAGTCACC AGCATGGCTA 
    TCAAGCTTAC AAAATATCAG TTCTTTTCTT CTCGTGCCAC TGCACTGCAC 
    CTAAGGAGGA GAGAGCTGAA GTTGCTTCCA TTCCCATCTT TTCCCTGCAG 
    CTCTAGTTCA GCTCCTAACA CTTGTTCACA GCAAAGTCAT CTCCTGTTAG 
    TTTCATCTGC AGGACCTAGA GAACAAACAT TACTTCCGGC TGATTCCCGT 
    TCTTCTCTCC CTCATGGCAT CACTGATAAC GGTACAAGAA AGGAAGGAAG 
    GAGGAGGAGG AGGGGGAGAA AGAGGAAGGA GACAGCAAAA GATGAAGGGG 
    AGTGTGTTCC ATCTGCGGAG GAAGTGTCCA TTAGGGTAAA TACTCTTTAT 
    GAGAGTGGCG ACCCCATTGG GAAGAAGGAG TTGGGCCGGT GCGTGGTACA 
    ATGGCTAAAG CAGGGTATGC ACTCAATGGC TATAAAATAT GCTTCCACAG 
    AAATGCAGAA CGATGGAGCA ACATTCTTAC TGGATGGTGG ATCATCTGAA 
    GACAACCTCG GATTTGTGAT GCTTGCACAG CCTTATCTAT CAGCAATTCC 
    CATGCCCAAG GGACAGGAGG CGCTCTGCCT CAAGGCCTCT ACTCACTATC 
    CTACCCTCTT TGACCACTTT CAAAGGGAAC TCCGTGATGT TCTGTTGAAA 
    CAACAGAACC AGGGTCTTAT TTCTGATTGG CGCACCACTC AATCTTGGAT 
    GCTTCTGAAA GAATTGGCTA ACTCAGCTCA GCATCGAGCA GCTGCCCGCA 
    AACCTAAAGC TCCTACTACG CACAGTACTC TTGGCATAAG TCTTGATAAG 
    ACAAGGTTGA TGCAGACCAA AATTGAAGAC TTTGTCAAGA AAATGTCAGA 
    CCTTCTACAT ATAGAACGAG ATGCGGAGCT GGAGTTTACA CAAGAAGAAC 
    TGAATGCCAC CCCTGTGATG GATGGGAACT CAAAGAAGCC ACTCAAACCA 
    GTAGAGTACT TAGTCACTCA TGGGCAGTCA CAGCAAGAGC AGTGCGATAC 
    CATTTGCAAT TTGAATGTTA TCAGCAGTTC AACTGGGTTG GATGGCCAGC 
    ATCTGGTCCT ATTTAGAGTG AAAGATAACC ATAGATTGCC TCCAACCACA 
    CTCTCTCCTG GGGATATGGT TTGTATCAGG ACATGTGATA ACCGGGGGGA 
    AATTACCACA TCTTGCATGC AAGGCTTTAT ATATAATCTT GGTGAGGATG 
    GTTGCAGCAT TACCGTGACA CTGAAATCCC GCCGTGGTGA TCCTACGTTC 
    TCCAAGCTTT TTGGGAAAAA TGTGCGGATT GACAGGATTC AGGCATTGGC 
    TGACGCACTT ACATATGAGC GAAATTGTGA AGCACTGATG CTTCTTTCAA 
    AGGAAAGGTT TACAGAAAAA GAATTCTTCC ATTGGAGTAG TAGCCACTCT 
    GTTTGGGGAC AAGGAAGACA TGATGATGAT GGAGCAGAAT AATCTGGCTG 
    ATTGGGGAGA ATCAACAATA CATGATGATG AGCTATTGAA AAAGAACAAA 
    TATGACTTTG ATGCCTCCCA GTTAAAAGCT ATCACACTAG GCTTGAACAA 
    CAAAAGGCCT GTCCTAATAA TCCAAGGACC TCCTGGCACG GGCAAGACTG 
    GTTTGCTTAG TTATCTCATT GCATGTGCTG TCCGAAAGGG TGAACGCGTT 
    CTCGTAACTG CTCCAAGCAA TGCAGCAGTT GATAACATGG TGGAGAAGTT 
    GTCAGATACT GGACTGGACA CAGTACGAGT TGGAAATCCT GCTAGGATAT 
    CTCCATCTGT TGCTTCAAGG TCCTTGGGAG AGCTTGTGAA CAGAAGACTT 
    CAGAAGTTCA CAGAAGAGTT CGAGAGGAAA AAATCCGACT TGAGAAAGGA 
    CTTGAAGCAT TGCATACAGG ATGATACATT AGCCGCAGGT ATACGTCAAC 
    TGTTGAAGCA GCTTGGGAAG AACTTTAAAA AGAAGGAAAA GGAAATAATC 
    AGAGAGGTCC TTTCAAATGC TGATGTTGTC CTATCAACTA ATATTGGGGC 
    AGCTGACCCA CTTGTGAGGA GGATTGGTTG CTTTGACTTA GTAATTATTG 
    ATGAAGCAGG ACAAGCAATC GAACCCTCAT GCTGGATCCC TATCTTACAA 
    GGAAAAAGAT GCATTCTTGC TGGTGATCAA CGGCAGCTTG CACCTGTTGT 
    TTTATCAAGA GAGGCTATGC AAGGTGGACT AGCAATGTCT TTACTCGAAA 
    GAGCTTCATC GTTGCATAAT GAACTACTGA CAACGAAATT AACAACACAA 
    TACAGAATGC ATGATTCAAT TGCCAGTTGG GCATCTAACG AGATGTATGA 
    TGGTTTTCTC AAATCCTCCC CATCCGTTGC TTCTCATCTT CTTGCTGATT 
    ACCCATTTAT CAAGGAAACT TGGATAACTC GGTGTGCCTT TCTTTTACTT 
    GACACTCGTA TGCCGTACGG AAGTTTGAAT ATTGACTGTG AGGAGCATTT 
    AGACCCTGCT GGTACAGGAT CTTTTTATAA CAATGGCGAG GCAGATGTAG 
    TTTCACAGCA TGTTTTGAAC CTTGTACAAT GTGGTGTCTC TCCAACCGCG 
    ATTGCCGTCC AGTCACCTTA CATTGCGCAA GTACAACTAT TAAGAGACAG 
    GCTAGAAGAT TATCCAGAGG CTTCTGGTGT TGAGGTTTCA ACTATAGATA 
    GCTTCCAAGG GAGGGAGGCA GATGCCGTGG TCATATCAAT GGTACACACT 
    TCCTTTGCTG TCTTTATAGG GTAGTCCTTC TTGGTTTGCT GTAAGGTGAC 
    CGTGGTACTT CAAATGCCGT GTTGAACCAT ATAATCTCAT GTCAATAAAA 
    GTTGCAGGTC ATTCTT

    Gene models with high sequence identity

    1. AT5G35970.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 413.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain 7.4e-06
    HMMSmart DEAD-like helicase, N-terminal 0.0022
    superfamily P-loop containing nucleoside triphosphate hyd 6.9e-29
    HMMPanther DNA-BINDING PROTEIN SMUBP-2 1.5e-121
    HMMPanther DNA2/NAM7 HELICASE FAMILY 1.5e-121

    See the detailed result >

    AT5G35970.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR