K10748

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10748

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10748

Determination of introduced cDNA(s)

  • J013064O20 - Rice Full-length cDNAs - Original: J013064O20

    full reading [+] show sequence

    Nucleotide sequence: J013064O20 - full reading 
    GACGAGATCA AGAAGAAGAG GAAGAAGTCG CTTCGCGGGC GATGGCGAGC 
    AGCTCGTCGC CGCCGCCGCC GCCGCAGATT CGTTGCGCCT CCTTCAATCA 
    GGACAACAGC TTGTTTTATG TCGGGACGAA GGATGGATTC AGGATTTTCG 
    ATGCCCATAC AGGGAAGCTC CACTACCAGA AGAATATTGG TGGAATCGGC 
    AATATGGAAA TGTACTTTCG GACAAACATT CTTGCTATAG TCGGAACTGG 
    TGAACAGCCT GTACTATCTC CTCGCTGCCT TCGCCTTATC GACACCGTAG 
    CAGCTGTCAC AAAGAAAGAT CTGAACTTTA TGACTTCAGT TTTGGCTGTT 
    CGATTAAGTA GAACGAGGCT TGTTGTTGTA TTGCAGGACA GGACCTTTAT 
    TTATGATGTA AACAGCACTA CTATATTGGA AGAAATTGAA ACAGTTCCCA 
    ATACAAAAGG TCTTTGTGCA TTCGCTCCTA ATTCAGAAGC ATGTTATTTG 
    GCCATCCCAG CAAGCACATC CAAAGGATCT GCTTTAGTTT ATAAGGCATC 
    AGAACCTGAA TTAATATGCC AGATAGATGC TCACGAGTCT CCCTTAGCTG 
    CAATGGCATT TTCTTCTAAT GGCACGTACC TGGCAACAGC TTCTGGGAAG 
    GGTACTATTA TTAGAGTATT TCTCGTTGCA CAAGCAACCA AGTCACACAG 
    TTTTCGGCGG GGAACATACC CATCAACAAT ATATTCACTC TCATTCGGAC 
    CATCGGATGA TCTGCCCGAT GTTCTTGTTG CCACAAGTTC ATCAGGCTCG 
    TTGCACATGT TTTTCCTCGA TGCTGCCAGA AATCGAAGGA ACCAAACGAG 
    CAAATTGCTT GGTTCAATGA TTCCTGGAGC AATAACTCGT GCTTTGGATC 
    CAGCAAACCA TCACATTATT CACAACGTCA TCCCTGCAGG AATCAAGAGC 
    TGTGTAGCCG TACATAAGGT CGAAAATTCA CAAAATTCTT CTAAACTTCC 
    TGCTTTAAGG ACTGTTGTCT ATATCATAAC TCATGATGGA TACTTCCGCG 
    AGTACTCGAT CAACACCACA AAGTCAAATG AATCTTCCTG GGTTTTGCAA 
    CGCGAGCTCA ATCTACTGGA TACCGGTTGT AGCACTCCCC AGCGGGAGGA 
    ACAACACAAG GACTGACTAG CAGACTAGTT GGCTCACCAA TGACAGAAGC 
    TTCAGCTGTG TGTACATACA ATTTGTAAGA TAGTGTGCTG GTAGGGCTGG 
    TCTGTGGTTT GGGCTGAGAT TCTAACTCCA ATTGGACAAG TGTATCATAG 
    ATGTGCCCAC CAATGGTGAG GGATGATTCA TCCTTCTTGT GGATGTAAAT 
    TATAGATAGT AACTGCCAAT ATGGCAATAT AATTACACTA CAAGTATATG 
    TAACTGCTTT GCTACACGAC TGACAGACTT TGCCCTGAGT GGTTACAATG 
    AAATGAACCA GCATACTGCC ATACTGAC

    Gene models with high sequence identity

    1. AT4G30510.1 [+] show detail - homolog of yeast autophagy 18 (ATG18) B
      E-value: 1e-85; Score: 313.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D WD40/YVTN repeat-like-containing domain 0.0000000022
    HMMSmart WD40 repeat 12
    HMMSmart WD40 repeat 0.0032
    HMMSmart WD40 repeat 50
    superfamily WD40 repeat-like-containing domain 6.7e-23
    HMMPanther WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINO 1.8e-86
    HMMPfam WD40 repeat, subgroup 0.0018

    See the detailed result >

    AT4G30510.1

    Model type
    Protein coding
    Short Description
    homolog of yeast autophagy 18 (ATG18) B
    Computational Description
    homolog of yeast autophagy 18 (ATG18) B (G18B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 1228 Blast hits to 1183 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 531; Fungi - 398; Plants - 152; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR