K10804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10804

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10804

Determination of introduced cDNA(s)

  • J013002K24 - Rice Full-length cDNAs - Original: J013002K24

    full reading [+] show sequence

    Nucleotide sequence: J013002K24 - full reading 
    GAGGCGCACC ACCCCGCCGC CGAGCGCCGC CGCTGCCACT GGACTGTGCT 
    GGCCACCCCA GCTCACCGCC CCCACCGCCG AGCGCCGGCC CACCACCCCG 
    CCGCCGAGTG CCACCACCGC CCCAGGTCAA CGCCCCCACA GCCGAATGGC 
    AGGTCAAGTT CCTGAGTCCT GACGAACGAA GAGAGAGTTG GGAGGCCCTG 
    GCTGAGACCA ACACCACCAG ATTTCACCAG AGTTGGGAGG TCCTGACTGA 
    GAGTTGGGCG GAGATGTCCT TCTTCTTCCG GGCGGCGTCG CGGCCGGCGC 
    GCCCGTCGCC GCAGGAGCTC GTCCGCTCCA TCAAGGAGTC CCTCCTCGCC 
    CTCGACACCA GGACCGGCGC CAAGGCTCTT GAAGATGTTG AGAAAAATGT 
    ATCTACTTTG AGGCAGACAC TTTCTGGCGA TGGAGAAGTT GAACCAAATC 
    AGGAACAGGT TCTACAGATA GCCCTTGAAA TTTGCAAGGA GGATGTCCTT 
    TCGCTCTTTG TTCAGAATAT GCCTTCCTTG GGTTGGGAGG GTAGAAAGGA 
    CCTTGCCCAC TGCTGGAGCA TTTTGTTGAG GCAGAAGGTT GATGAAGCCT 
    ATTGCTGCGT GCAGTATATT GAAAATCATT TTGATCTTCT AGATTTCCTT 
    GTAGTTTGCT ACAAGAACTT GGAAGTTGCA TTGAACTGTG GGAATATGTT 
    GCGAGAATGC ATAAAATATC CTACACTTGC AAAATATATA TTGGAGTCAA 
    GTAGCTTCGA GTTGTTTTTC CAGTATGTTG AATTATCGAA CTTTGATATT 
    GCTTCTGATG CTCTGAACAC CTTCAAGGAT TTGCTCACCA AACATGAAGC 
    CGCAGTTTCT GAGTTTCTGT GCTCCCATTA TGAACAGTTC TTTGAGCTCT 
    ACACAAGACT TCTAACTTCA ACTAATTATG TTACAAGAAG ACAATCAGTG 
    AAGTTTCTTT CAGAGTTTTT GTTAGAGGCC CCAAATGCTC AAATAATGAA 
    GCGGTACATT GTGGAAGTCA GTTATTTAAA TATCATGATT GGCCTGCTGA 
    AGGATACAAG CAAAAATATC AGGATATGTG CCTTCCACAT TTTCAAGGTA 
    TTTGTTGCCA ATCCAAACAA GCCTCGTGAT ATTATTCAAG TTTTGGTAGA 
    CAATCACAGA GAACTGTTGA AGCTACTAGG CAATCTTCCC ACAAGCAAAG 
    GTGAAGACGA GCAACTTGAA GAGGAGAGAG ATTTAATCAT CAAGGAAATC 
    GAGAAGCTTG TGCATTCATC GGTATAGACC CTCAAGAAAT TCAAATCCAT 
    CCGTTCAAGT TTCGCTGGTC AAGAAATGTG ATCCCTTTCT TCCCTTCTTG 
    TTTTTAAGAC CTGTGTAATG TGATCCCTGT ATAGAGGGTG TTTATCATAG 
    GGAAATAGTT TGACC

    Gene models with high sequence identity

    1. AT5G18940.1 [+] show detail - Mo25 family protein
      E-value: 5e-125; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 4.1e-106
    HMMPfam Mo25-like 3.9e-121
    HMMPanther MO25 2.6e-101
    HMMPanther MO25-RELATED 2.6e-101

    See the detailed result >

    AT5G18940.1

    Model type
    Protein coding
    Short Description
    Mo25 family protein
    Computational Description
    Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT5G47540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR