K10827

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10827

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10827

Determination of introduced cDNA(s)

  • J013071P15 - Rice Full-length cDNAs - Original: J013071P15

    full reading [+] show sequence

    Nucleotide sequence: J013071P15 - full reading 
    GATGCGAACA ACGCTTTTAT GAATCGTCTC ATCTTCATGT CCTATTACTC 
    CTACCACTGA GAGAGGGCCA CTCTTTCCCC TCGAGTTCTT CACCGGCTTC 
    TTTCCCCTCC TCTCCGGACC AGGGAAGCAG CTAACTGTCT GCGCAAGAAA 
    GGTGGTTCAA GCACGATGGG ACGGAACCAT CTTTGCCTGG TCACTTGCTT 
    GTGGATTCTG TCATGCGCAG TTCTGCTTCA TGCTTCTCCT GATGGATTGC 
    TGAGAATTAG CCTGAATAAG AAGAGATTGG ACAAGAAGAC CTTGGACGGT 
    GCAAAATTGG CAAGGGAGGA AAGCCATCGT CTGAGAGCCG ACGGTTTAGG 
    TGATGACATA GTTCCTTTGG ACAACTACCT GGACACGCAG TACTTTGGAG 
    AGATCGGCAT CGGCACTCCA CCACAGAACT TCACTGTGAT ATTCGACACT 
    GGAAGCTCCA ACTTGTGGGT TCCATCAGTG AAATGTTATT TTTCGATAGC 
    ATGCTACTTA CACCACAGGT ACAAGTCAAA AGGGTCGAGC AGTTACAAAA 
    AGAATGGAGA ATCTTGCAGC ATTTCCTATG GGTCTGGATC AATTGCTGGT 
    TTCTTCAGTG AGGATAGCGT GCTAGTTGGG GATCTTGCTG TGAAAAATCA 
    GATGTTCATT GAGACAACCA GGGAACCGAG CCTTACTTTC ATCATCGGGA 
    AGTTTGATGG AATTCTTGGA CTTGGATTTC CGGAGATCTC TGTGGGAGGA 
    GCCCCTCCAA TTTGGCAGGG AATGAAAGAG CAGCAACTGA TCGAGAAGGA 
    TGTATTCTCC TTCTGGCTCA ACCGCGATCC TGATGCACCG ACAGGGGGTG 
    AGTTAATCTT TGGTGGTGTA GACCCAAATC ATTACAAGGG GAGCCATACA 
    TATGTTCCTG TTACCCGCAA AGGCTACTGG CAGTTTGAGA TGGGGGATCT 
    TCTTATTGAT GACTACTCAA CTGGGTTCTG TTCTGGTGGT TGCGCCGCTA 
    TTGCGGATTC AGGGACTTCA TTGCTCGGTG GCCCAACAAC TATTGTTGCT 
    CAAATTAATC ACGCAATTGG AGCTGAGGGA ATTGTTAGTA TGGAATGCAA 
    ACAAGTTGTG CGGGACTACG GGGACATGAT CCTCGAGATG CTCATAGCAC 
    AGGCAAGCCC CATGAAACTG TGCTCTCAGA TTGGTCTCTG TGCATTTGAT 
    GGTACTCGTT CTGTCAGAAA CAATATAGAG TCTGTTGTTG ATAAAGAAAA 
    GGTGGGCTCA GATCTTTCCT GCACTGCTTG CGAGATGGCT GTTGTCTGGA 
    TACAGAATCA GCTCCGACAT AACCAAACAA GGGAGCTCAT TTTGCAATAT 
    GCTGACCAGC TCTGCGAGCG TCTCCCAAGC CCCAATGGCG AATCGGCAGT 
    CGACTGCGAT GAGATCTCAA ACATGCCGAA CCTTTCATTC ACCATAGCAA 
    ACAAGACCTT CACCTTGACA CCAGAGCAGT ACGTAGTGAA GCTGGAGCAG 
    CAAGGTCAAA CTGTTTGCAT CAGCGGGTTC ATGGCGTTCG ACGTGCCACC 
    TCCACGCGGC CCACTCTGGA TTCTTGGAGA CGTGTTCATG GCTGCATACC 
    ACACTGTCTT CGACTTTGGC AAAAACAGGA TTGGGTTCGC CGAGTCTGCT 
    TGAATTGCTT GGCTAGGGCC TTCAGGATCA TACAACATAT CAAGTATTGT 
    AATGTTTGTT AGGCAGCTTG TTTACTCGGT ATTGTAACCT GGGAATGTCT 
    AAAGGTATAG TGCATTAGTA GTAGCATGCA AAACCTTGTA GAGGAATAAA 
    CGTTTTCACG ATGGAGCTGT ATCAGCTATG GATATGCAGA TATGGATCTT 
    GGATGGTGCA ATGCAGATGT AATGAGCAAA TGAGCACGAT GAGAATTAGG 
    GCTTTTTAAT CTGATCTCAT CATATAGGTA ATGGTTTGTC TGGCATATAA 
    TGATGGGCCT AAAACTTCTG GCGAGGTTAA TAATGGCTGT ACTGACTGTT 
    TATGCACCTT AACATTCAGA GTTCAAAATC TCTCATTAAC CAATTTGTGA 
    TGGATGCAGC C

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 3e-177; Score: 619.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase A1 5.9e-29
    FPrintScan Peptidase A1 5.9e-29
    FPrintScan Peptidase A1 5.9e-29
    FPrintScan Peptidase A1 5.9e-29
    ProfileScan Saposin B 12.404
    ProfileScan Saposin B 12.107
    HMMPanther ASPARTIC PROTEINASE-RELATED 4.1e-223
    HMMPanther Peptidase A1 4.1e-223
    PatternScan Peptidase aspartic, active site 0
    HMMPfam Peptidase A1 3.9e-125
    HMMPfam Saposin-like type B, 1 0.0000000000011
    HMMPfam Saposin-like type B, 2 0.000000000068
    superfamily Peptidase aspartic 5.7e-124
    superfamily Saposin-like 2e-23
    Gene3D Peptidase aspartic, catalytic 3.2e-83
    Gene3D Saposin-like 0.00052
    Gene3D Peptidase aspartic, catalytic 1.7e-21

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR