K10835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10835

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10835

Determination of introduced cDNA(s)

J033071B08 - Rice Full-length cDNAs - Original: J033071B08

full reading [+] show sequence

GGAGAGAGAG AGAAACAACA CCACCACCAC CATCACCAAC GACACCGAGA 
CGGAAGGAAG AAGGAGAAGA AGGCGAGAGA GAGAGTAGTT CACTTCCCTC 
CTCTCCTCTC CCTCTCTTCC CACTCTCACG TCTCCTCTCT TCCCCTCCGC 
GAAGCAACGG GGGGCGAGGC GACGGCAGCG GAGGAGGAGG AGGAGGCGGC 
GGCGGCAGCC GAAACCCCAA GAAAACGCCG CCCCTTTTTC TTTCTTTCTT 
GCCTTGCACA GCCTCCTCCT CGATCCGTCG CGCGTTCGTC GGGCGAGATC 
CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCGGTTTCCC CCGCGTGCGA 
GATTGAGCCT GGAAGCCCAT TCAGCGGCGG GGTTGGGGCG GCAGGCGGCT 
GTGAGGTTCT TGATTTGATC TGTGGTTGTT GTTGAGGTTG TGGTTGGGCG 
CCATGGCGGC GGCGGGAGGG CTGGAGCAGT GGCAGAAGGA CGGGTTCTTC 
CAGGCCGCCG AGGAGGTGCA GGAGTCGGCG GACTTGATGG AATCTATTTA 
TAGAACTTGG ATGCGGGAAC GCGATAGCGG AGCTAATTTA GAGGAGCTGA 
GCGATTTGCA AAGGGAGCTG AAGACAGCAT TAGGAACTGC AAAGTGGCAG 
TTGGAGCAGT TTGAGAGAGC TATAAGCATG AGCAATGATA AGTATTCTTT 
GGAAGAGGGT ACATTGGCCA GGCGTCGGCA GTTCGTTGTA GCAATGGAGG 
ACCAGATTTC TCAAGTAGAG AAACAAATAA ATGATTACTC GATTGACAAT 
GATAGGCGAG GGCTCAACTG GGTAAAGTTA GATGATGAGG AACGAGATGA 
TCTTGTGGCT TTCCTTTCAG CACCTGCACA GTTATCTCAA GATACAAAGA 
AAAGAGACAA CACTTACCAT AGTCCATCAA AACAAAAGAA TGCGTTGATT 
GGCGCGAATG ATCCCAGGGA CATGGCTGCA ATCAGTAAAG ACCGACATAA 
AACTGAAGCA TTATGCAGAG AAATTTCAAA TGGTCAGAGT GAAGCTTGTT 
GTCTAGCCGA GCAGTTAAAT GGTCACAGTA CAAGCCCGAG TTCTGGTGGT 
GAACACTGGA AGATCGATAT TTCTGATGAT AAAGACGATG ATAGAAAATT 
GTCCCCTAAC AAGGTCGAGG CATCAAGTCA GGCAACTGCA TTTTCTGGTA 
TCATGAAAAC CACCGAATCT TTCACAAGAG TAAGATGGTT GAGGAATAGC 
TTGTGGAAAG CCAAGAGTGA TGAACATCTT CCGTTAAGAT ATGATATGCC 
AAATCACTTA GACTGGAGGG TTATAACCTT ATTAGCACAG AGGTTTAACG 
GGCTTACTGA AAGAAGCAGG AGTTGTTTCA GCGGTTGGAA GGAAAACTCT 
AGAGTATCTG GAAGGATGGG TGGACTTCAT ATACAAGGGC CGCAATACAA 
CACTCAGTTT GGTCGTTCCA TTCGAATAAC CCTTTTACTG GTGTTGAGCA 
TCTTTCTGAT TGTGCCATTT CTCGTGTACT CAGCTTGACA ATGCTCATAT 
TGGTGGCTGC TGGTGAAGGA AAAAGTATCC GTTATTGTAC TTGCAAACCG 
TGGTTGGTGT TATTCACATG CTCAGATGAA ACAAACGAGC GGGTAATTAC 
AGATGGAGCT GTACATAGGA GGGGAAAAAG AAACAAAACG GGAACGACTT 
CATTTGTGGA GAGGAAAAAG AAACAAAACG GGAACGACTT CATTTGTGCA 
ATGCAAAATT TCCAAGATCA GAAAACGTGT TGTCACCAGC AGAAAATCAT 
CCTGAGATGG ATCCATAGTT AATGGCTATT TGGAGTCTGT TGTGATGGAT 
GATTCATTGA TTCCTGCCAA TTTCTCCTTG CTGCTGTACC CTCACCAAGG 
CAATTGTAAA AAAAAAATGT AGAGCTGTTG GGAAATGGAT TTGAACGACT 
ATTGTGAATG ATTTATACAA TTTGTGGAAG TGAACAGTTT CGGTG

Gene models with high sequence identity

AT4G30240.1 [+] show detail - Syntaxin/t-SNARE family protein
E-value: 1e-33; Score: 142.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Syntaxin 6, N-terminal	1.2e-24
superfamily	t-SNARE	1.4e-27
HMMPanther	SYNTAXIN 6	0.00036
HMMPanther	SYNTAXIN	0.00036
Coil	coiled-coil	0

See the detailed result >

AT4G30240.1

Model type: Protein coding
Short Description: Syntaxin/t-SNARE family protein
Computational Description: Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT2G18860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR