K10841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10841

Determination of introduced cDNA(s)

  • J023127H10 - Rice Full-length cDNAs - Original: J023127H10

    full reading [+] show sequence

    Nucleotide sequence: J023127H10 - full reading 
    GACTACTACC ACTGATCACA CTTGCTACTA CTACCACACA TGGCGAGGAG 
    AGCGCGGGAA GAGGAAGCGG ATCAGGTGGA GAGGAAGCTG GTGCTGGGGC 
    GGTACGAGCT CGGGAGGCTG CTGGGGCAGG GCACGTTCGC CAAGGTGTAC 
    TACGGCCGTG ACCTCCGGTC CGGTGAGAGC GTGGCGATCA AGGTGATCGA 
    CAAGGCGCGG CTCCGTCGCA CGGAAGGGAT GGTGGAGCAG CTGCGGCGTG 
    AGATCTCCAT CATGCGGATG GTGCGCCACC CCAACGTGGT GGGGATCCGC 
    GAGGTGCTCG CCAGCCGCGC CCGCGTGTTC GTCGTCATGG AGTACGCCCG 
    CGGCGGGGAG CTGTTCGCCA AGGTGGCGCG CGGGCGGCTC ACCGAGGAGC 
    ACGCGAGGAG GTACTTCCAG CAGCTCGTCG CCGCCGTCGG GTTCTGCCAC 
    GGCCGCGGCG TCGCGCACCG GGACCTCAAG CCCGAGAACC TGCTGCTCGA 
    CGAGGAGGGG CGGCTCAAGG TCACCGACTT CGGCCTCGCC GCGCTGCCCG 
    AGCAGCTGCG ACAGGACGGC CTCCTCCACA CGCAGTGCGG CACCCCGGCG 
    TACGTCGCGC CCGAGGTGCT CCGGAAGCGC GGCTATGACG GCGCCCGCGC 
    CGACCTCTGG TCCTGCGGCG TCGTGCTCTA CGTGCTCCTC TGCGGCTTCC 
    TCCCGTTCCA GCACGAGAAC TACGCCAAGA TGTACCAGAA GATCTTCAAG 
    GCGGAGTACC AGGTGCCGCC GTGGGTGTCC GGCGACGCGC GCCGCCTCAT 
    CGTCCGCCTG CTCGTCGTCG ACCCGGCCAA GCGCATCTCC ATCCCGGAGA 
    TCATGCGCAC GCCATGGTTC AAGAAGGGCT TCGTGCCGCC CGTCCCCACC 
    TCCCCTGTCT CCCCCAAGAA ATGGGAAGAA GACGATGTCC TCCTCGACGG 
    CGGCGACTCC GGCGCCATGT CGCCCCGGAC GTGCAACGCG TTCCAGCTCA 
    TATCCTCCAT GTCCTCCGGG TTCGACCTGT CGGGGATGTT CGAGAGCGAG 
    CAGAAGGCCG CCACGGTGTT CACGTCGCGC GCGCCGGCGG CCACCGTCAT 
    CCAGAAGCTG GAGGCCGTGG GGCGATCGCT GGGTTACAGC GCCACGAGAG 
    GGAAAGGGTG GAAGCTGAGG TTGGAGGCGA CGGCGGACGG AGCAAACGGG 
    CGGCTCGCGG TCACCGTCGA GGCGCTCGAG GTGGCCGCCG ACGTCGCGGT 
    GGTCGAGTTC GCGCACGACG CCGGCGACGA GCTCGAGTTC AACAAGTTCT 
    GCGCCGTCGA CGTGCGGCCG GGGCTCGCCG ACATTGTCTG GGCGTGGCAG 
    GGCGACCGGC CGGCGGCGCC CGACGTTGCC GCCGCCACCG TCGAGTGCTC 
    GCCGGCGTGA TCAGAGCCGT CCGTTCAGCG CGACGTGAAA TCTGTAGGAT 
    GTATTAGCTT TAGCTTCTTT GCTCGCGGTT ATGTACAGGC CAAATCGAGA 
    GATGTGTAAA TACAAAAGTT TTGTTACTTG ATC

    Gene models with high sequence identity

    1. AT5G10930.1 [+] show detail - CBL-interacting protein kinase 5
      E-value: 1e-138; Score: 490.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CBL-interacting protein kinase 4.8e-195
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 4.8e-195
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 51.721
    ProfileScan NAF/FISL domain 12.748
    Gene3D no description 1.2e-65
    HMMPfam Serine/threonine-protein kinase-like domain 7e-71
    HMMPfam NAF domain 5e-20
    superfamily Protein kinase-like domain 6.6e-94
    HMMSmart Serine/threonine-protein kinase domain 1.3e-102
    HMMSmart Tyrosine-protein kinase, catalytic domain 4.6e-11

    See the detailed result >

    AT5G10930.1

    Model type
    Protein coding
    Short Description
    CBL-interacting protein kinase 5
    Curator Summary
    Encodes CBL-interacting protein kinase 5 (CIPK5).
    Computational Description
    CBL-interacting protein kinase 5 (CIPK5); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 25 (TAIR:AT5G25110.1); Has 132030 Blast hits to 129710 proteins in 4599 species: Archae - 195; Bacteria - 15419; Metazoa - 48583; Fungi - 13177; Plants - 32322; Viruses - 524; Other Eukaryotes - 21810 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR