K10904

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10904

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K10904

Determination of introduced cDNA(s)

  • J033097L06 - Rice Full-length cDNAs - Original: J033097L06

    full reading [+] show sequence

    Nucleotide sequence: J033097L06 - full reading 
    GGTCTGCTTA CCGCCTTCTA CTCCGTCTTC TTCCTCCTCT CTCTCTCTCT 
    CTCTCCCTCG TTGCCGTCGC GACTCGCGAG GAAGACTGGT GTTTTGGGGG 
    TACAGGGTTT GGTTCATCGA GGCGATGGAG AGCGGAGCCG GATCCTTGGA 
    GGCGCGGCCG GGCGTCCTCG TCGTCGGCGC GCCTGGCGTC GGCAAGAGAA 
    CCATCCTCTC CCGACTGCTT GCAGCTGAAA TACCGGACAC ACATGACTTG 
    TCATCAGGTG TGCTGTGTCA GGGGTGGAAC ATTGACACAA AGTACTACTC 
    AGCAGATCTT TCTGTTTGGA CGGCACATCT TGGGCAAGGG TTTTCTCTTG 
    ATTCCCTCCC TCATCTCGAC CAGTTGGATG CTCTTGTTAT GGTCTTCGAT 
    ATGAGTGATG AATCATCCTT CCTTACTCTC CAGAACTGGG TTTCTAGTGT 
    TGATGTTCAG AGGTTTGAAA TTCTGTTGTG CATTGGAAAT AAAGCAGATC 
    TTGTGCTTGG CCATGGTGCA CACGTAGAAT ATAGGAGGCG TATGCAAAAG 
    ATTGGCGAGT CAAGTACTGA TCCACATCCT GAATATTTGG ATTTTGGGAT 
    AAACGAAAGT GAAGGTTGTG GATTGTTATC AGAGGAAGAA CCACAAATAG 
    AGATCAGAGA CTCCGCTTCA CATTGGTGCA TTGAACACAA TATTGAGTAT 
    GTCAAAGCTT GTGCTTCCAA TGCTGACTTT GATAAATGTC TATCGGTGAA 
    TGGAGATAGT CAAGGCTTAG AGCGACTCCT TGGAGCCCTT TCTGCACACA 
    TGTGGCCTGG AATGATTCTG AAATCTGGAA ACAGAATAAC CGTTCCATCC 
    TTGGTTGAGA AAGAAGAATC TACAGATGAT GAATCCAATT ACGAATTTGA 
    GTACGAAGTT CTGTCCCATG GATCTGATGA ACAATGGGAA TTCATTGGTG 
    AGTCAAGTAC GTCAAGAGAC TTGGAGGGAT TGAATGAAGA TACAGCTACT 
    CATGATAAAA CTAATCAGGT TGTGGATGCT GATGCTAATT CAGTGGCATC 
    CAATCCTCTT CCAAATGGCA GAATGACAGA AACTGCTGAG GAAAAACTGG 
    TACCTCAGAG CCACAAAAGC GAGGTTAGTA ATGATATGGA TAACACACAA 
    GCAGATGCTT CAGAGAAACT GCAAGCTGGT ATCCCAGAGG GTAACAAGCT 
    ATTTGAAGAT GAGCATTACG GTCTAGATGA TCTGGAGCGG CTAATGTCAG 
    AGATTGGCAA CATGCGCTCC AATTTAAGGC TCATGCCTGA CTTCCAAAGG 
    AAAGAGATGG CTGCCAAGCT TGCCATGAAA ATGGCAACCA TGTTTGGTGA 
    TAACGACGAA GAGGGCTCTG AAGATATCTG ATTCAATTCA CGGAGCCCAC 
    CTTTTGCATG TCTTCAAACA TATGTTCCCA GTTTATGGCG TGCTGATTTG 
    TACAGGCAGA TGGGCCGCAG GCCGTGTAGG CATTTCCATC GGCTATCATA 
    ATTCCCAGTG AAATTTTGTA CCTTAGTAGT TCCATATTTA CCATTCTTAC 
    TGCTGTAAGT TGTATACTGT ATTATTTGAA ATTAAAGTTC TCT

    Gene models with high sequence identity

    1. AT5G65960.1 [+] show detail - GTP binding
      E-value: 4e-86; Score: 315.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.4e-12
    HMMPfam Alpha-/gamma-adaptin-binding protein p34 3.9e-29
    HMMPfam Ras 2.4e-08
    HMMPanther RAS-RELATED GTPASE 1.4e-07
    Gene3D no description 3e-06

    See the detailed result >

    AT5G65960.1

    Model type
    Protein coding
    Short Description
    GTP binding
    Computational Description
    GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR