K10905

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10905

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10905

Determination of introduced cDNA(s)

  • J013059J01 - Rice Full-length cDNAs - Original: J013059J01

    full reading [+] show sequence

    Nucleotide sequence: J013059J01 - full reading 
    GCGAAGAGAG AGGTGAGAGA GGAGGAGGAG GCGGACTCGC CGGAGCCGGA 
    GGTTGCCGGA GGCGGCGGCG GCGGCGGCAT CGCGCTCTTC TCCTTCGCTG 
    CTTCTCCGGG GAAAGAGGCA AGGTTCATCA ATGGCAACTC CAAATACCTA 
    TTCAGTCCAT ATCTCCTCAG AAACCCACAG GATTGAGGCC TGGTTGGCAT 
    CTGATGAAGC TTTAGCTAGG CAGTTGCAAG AGGAGGAGAA TGCACATGAT 
    GCTATTGCTA CAAGAGAATT TGCTGGTAAC GCATCCTTGG AACCATCGTC 
    ACCAGCTGTT GAGTACAGAC CTCCCAATAA TGCAGCTCAG GTTGCAACGG 
    AAGACAATGT TGACCCTGAT AATATGTCTT ACGAGCAACT ACAAGCATTA 
    GGGGAAGCAG TAGGAAATCA ATCCAGAGGA TTATCTGATG ACCTGATATG 
    CTATTTGGTG CCTTTTAAGA ACAAATGCAG CTTCTTCTCC AGGAAGAAGA 
    ATGATGAGGA ATGTGTGATC TGTAAATCGA CTTATAAAAG CCGACAGAAA 
    TTGATAAGAT TGCCCTGCAG CCACTGTTAC CATGCAGATT GCATAACTCG 
    CTGGCTTAAG ATCAATAAGG CATGCCCAGT CTGCAATGAG GAGGTATTTG 
    GGTGAATCAC AGCGCTTGTG GCAACGCTGG TGATGTTTGC GTTGTGTTCA 
    GACACGTTAT GCTCCTACAC CCTATGCTAT ACACCGGTGC TCAAGGAAAA 
    TGCGTTTTGG TATACTCGTA CTACTAACTG AACCATGCCA TGGCCCATGG 
    CTGTGATGTG TCCATCCAAC TGAGTTTTAT CACAAATAGA TAAATCTGTG 
    TGTGTACTAG TACTATGGTT GCCATTTTTC TGGTAATGCA ACCTAGCAGA 
    AGCAGCTAAA TAGATACTCT ATGTATTGCG CCATCTTTTA CATGATCTCT 
    GCTGTGGAAA GAAGCACAAT TGTGAATGTT CTACACCCCT ACTCTGCCAT 
    CTTCAGTTAA TTCAGCAATA CTGCATTTGC TCTACAGCTT GTGTGTGTAC 
    AGTGAACATG GTTCTTTCAG CCAAAACTTT TGTTAGCATA TAGTGATGTT 
    CTTTTCTTTT CCTTTCTTAT TTTGTAAGGT AGATGAAGCA GACATATCAT 
    AAACCACAGT CAGAAACTTT CCAGCAAAAA GGAAAAGGCT TATGTTAGT

    Gene models with high sequence identity

    1. AT3G63530.2 [+] show detail - RING/U-box superfamily protein
      E-value: 9e-30; Score: 128.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 2.5e-14
    HMMSmart Zinc finger, RING-type 4.5e-06
    Gene3D no description 3.9e-12
    ProfileScan Zinc finger, RING-type 12.091
    HMMPfam Zinc finger, C3HC4 RING-type 2e-06
    HMMPanther RING FINGER PROTEIN 38 1.5e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 1.5e-16

    See the detailed result >

    AT3G63530.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Curator Summary
    Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
    Computational Description
    BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR