K10911

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10911

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10911

Determination of introduced cDNA(s)

J033143C16 - Rice Full-length cDNAs - Original: J033143C16

full reading [+] show sequence

GGCTGGAGTC ACCCGAAGAC CGATAACTCC TCGAAGAGGC ACTGTGCTGA 
ACAAGGTAGC TGATCTTATT GACCCAGCTA CGGGCTGGTG GGATAAACCA 
CTAGTGGAGG AGATTTTTTG GGAGTCTGAT GCCAGGAACA TTCTGGCCAT 
CCCGGTGAGA TTAGACACAA ATGATTTTGT AGCCTGGCAT TTTGATACAA 
GAGGAGTGTA CTCGGTCAAA TCTGCGTACC ATGTCCTGGA AGATCAAAGG 
GAGAGATCGG CGAAGAAGCA AGAGGGCGGT TCATCCTCTG GAGCGGTGAA 
CCAGCGGAAT TTCGAGTGGG ATAAAATCTG GAGTTTGCAA TGCATTCCTA 
AAGTCAAACA GTTTATCTGG CGGCTTGCCC ATAACAGCCT CCCCCTGAAA 
CTCAACATCA AAAGGAGAGT ACCAGACGCT GAAACTCTAT GCCCGGTCTG 
CAAAAGGTTT GATGAGAATG GTGGACACTG CTTCCTGCAA TGCAAGCCCA 
TGAAACTCTG CTGGAGAATT TTATGCCTTG AAGATATCCG TTTAAGCTTG 
ACTCAGCTTG TTTCTGCTAG AGATGTGGTT CAGACCATTT TGAAGCTGGA 
GAATGATCGA AGAATGGAGG TCTTCTTTCT TTTGTGGGTT TGGTGGTATG 
CACGCAACAA GGTGAACTCG GGGGAGGACG TAATCAGAGT GGAAGAAGTG 
GTCCACAAGG TGAAACAGCT GATCTGTGAT CATGCCTCTC TGCGCAAAGG 
AAAACATCCC AAGGTGAATG TGCAAAGAAA TAAGTGGGTT CCCCCTGTAG 
ATGGTAATCT GAAGCTCAAC TTTGATGGAG CCTTCCGAGC TGTAAACAAG 
TCTGGTGGTT ATGATTTCCT GGTTCGTGAC CTCCGTGGAT GTGCTGTTCT 
TGCGGGTGCC GGCTGCCTGG AACATGTACA TGATGCTTTT GCAGCTGAAG 
CTGAAGCTGG TTTAGCAGGC CTAAAATCTG CTATTTCGCA TGGTATTAAC 
TCTGTCCAGG TGGAAACTGA TTCACCATCC TAGTGAGAGC CTTTCACTCT 
CATGAGTACG CTCTCTCTCC TTGCAGTTCT ATCGTAAGGG AGATCAAGGA 
TCTCGTCCAT TTAAATTTTT CTAGTGTTGT GTTTAATTAT GCCCCGTGAT 
CATGTAATGT GGCTGCGCAT AAGTTAGCTC AAATGGGTGT GTGCTGGGAA 
TTGGGTCAAG CAAGTGTGTG GGCTGACCTG TCCCTGACAT TGTACAAACT 
ATTGTGGATC GTGGTATCAC TGATCCTAGT ATTTAATAAA GCGCGCCGGT 
TTAACCC

Gene models with high sequence identity

AT4G29090.1 [+] show detail - Ribonuclease H-like superfamily protein
E-value: 3e-17; Score: 87.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RE	3.4e-16
HMMPanther	RNA-directed DNA polymerase (reverse transcriptase), related	3.4e-16

See the detailed result >

AT4G29090.1

Model type: Protein coding
Short Description: Ribonuclease H-like superfamily protein
Computational Description: Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR