K10913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10913

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10913

Determination of introduced cDNA(s)

  • J033051D02 - Rice Full-length cDNAs - Original: J033051D02

    full reading [+] show sequence

    Nucleotide sequence: J033051D02 - full reading 
    GCTCGTTTCC CTTTCCTCCT CTCTTCCACC ACGCGAGGAA TAAATAGCAG 
    GACACCGGAT TGGAGTAACA GAGAATTTAT TTTTTTTTTC AGTTTTTTCC 
    CCCACCCACA CCACAAGCAG ACGAAGAAGA AGAACAAGGT TCGTCCGTCG 
    AGATGTTGGA GGAGCTGCTC ATCTTCACGC GCGGCGGCCT CATCCTCTGG 
    TCGTCATGCC GGGCGCTCGG CGGCGCCGCC CTCAAGGGCT CGCCCATCGA 
    CGCCCTCATC CGCTCCTGCC TCCTCGAGGA GCGCTCTGCC GACGCCAGCT 
    TCTCCCAGGA CACCTATGCG CTTAAGTGGA CCTTTAACAA TGACCTCGGC 
    CTCGTGTTCG TCGCCGTTTA CCAGCGCATG CTCCACCTCC TTTACGTCGA 
    CGACCTCCTC GCCGCCGTCC GTAAGGAGTT CTCACAGATT TATGATCCCA 
    AGCGCACCTC CTATGATGAC GCCTTCAATG AGGTTTTTCG CCAGCTCCAC 
    CTCGAGGCTG AGGCTCGCAG TGAGGAGATG AAGAAGAATA AACAGGTCAC 
    TGGTTCCCGG CCCACCAAGG TTACCACTAA GACCAATCGT GGCGACACTC 
    AGGGCTCTGG TGGTGGTAGG AAGAAAGGTG ACTCGGGGAA GGACGACTCT 
    GATGGTGACT CCGGGAAGGA GCACACTTTG CCAAATGGTA ATTCCAAGAT 
    GCAAGAGAAT AGCCTCAAGG ACAATTCTCA TGCCCGCAGT GTTGTTGTTA 
    AAGGAAAGGA GAACGGAGAC CCCAACGATG GGGCCTTTGA TGTAAATAAG 
    TTACAGAAGA TGAGAAACAA GGGTAACAAG AAGAATGAGG TTGCTAGTAA 
    TGTGGCCAAG AACACCTCTA AGGCTAACAC AAAGAAGAAT TTGAAGAAAA 
    ATAGGGTTTG GGATGACACA CCTGATGACA AGAAGAAGCT GGATTTCACA 
    GACCCAGCTG ATGAGAGAGG GGATGAGGTG ATAGACCAGG TGGTTGTCAA 
    GCAGGGGGAA AGCATGATGG ATAAGGATGA TGTCGTGAGC AGTGATAGTG 
    ATGAAGAAGA GGAAGATGGA GAGGAAAATT CTGGAGCTTC CCAAAAGAAG 
    AAAGGATGGT TCTCCTCGAT GTTCAAGAGC ATTGCAGGTA ACAATGTGCT 
    TGAGAAGTCT GACATCCAAC CTGCACTCAA AGCGCTTAAA GATAGGCTGA 
    TGACTAAGAA TGTGGCTGAA GAAATTGCAG AGAAACTTTG TGAATCAGTG 
    GCAGCTAGCC TTGAGGGCAA AAAGCTGGGA TCCTTCACAA GGATATCCTC 
    TACTGTTCAG ACAGCTATGG AGGAGGCTCT TCTTCGCATC TTAACCCCAA 
    GGCGATCTAT TGACATATTA AGGGATGTAC ATGCTGCCAA AGAGCGTGGG 
    AAGCCATATG TTATTGTTTT TGTTGGAGTG AATGGAGTTG GCAAATCTAC 
    CAATCTTGCA AAGGTTGCTT ATTGGCTTCT TCAGCATAAC CTCAGTGTAA 
    GCCTGGCAGC ATGTGACACC TTTAGATCTG GTGCTGTTGA GCAACTGCGT 
    ACTCATGCTC GCAGGCTTCA GATACCTATA TTTGAGAAGG GATATGAAAA 
    AGATCCAGCG GTTGTCGCAA AGGAGGCTAT TCAGGAAGCT ACTCGTAATA 
    AGTCAGATGT TGTTCTTGTC GACACTGCTG GACGTATGCA GGATAATGAG 
    CCACTCATGA GAGCACTCTC CAAGCTCATC AATCTCAATA GCCCAGATCT 
    AGTTTTATTT GTTGGGGAAG CATTGGTTGG TAATGATGCT GTTGATCAAC 
    TCACTAAATT TAACCAGAAA TTAGCAGACC TTTCCGCTGT CCCTACTACC 
    AGATTGATAG ATGGCATCCT GCTCACCAAG TTTGACACCA TCGACGACAA 
    GGTTGGAGCT GCACTTTCAA TGGTTTATAT ATCTGGAGCT CCAGTCATGT 
    TCGTTGGCTG TGGTCAGTCT TACACTGACC TCAAGAAGCT CAATGTCAAA 
    TCCATCGTTA AAACCCTGCT GAAGTGAATG TGGTGCGCCG TTGTGCGGCA 
    CCTCGAATTC GTACTGCCAG TATTGCTATC GTCGAAACCC CCATGACCTC 
    GTCGTCATCG TGTTGGATGT GTTCTGTCCT GGTTTACTGT TGTAGTAGCA 
    CAAACTATCG TGCGCTTTTT CAGTTATGTG ACTGCTTTGT ATCACAGGTT 
    TTACCTGTTT TACCCTGGAA TATATACTTA CTAGTGGTTA ACATGGGCTG 
    ATATTCTCTC CATTAACTAC TTGCATTGAT ACGGTGTTAC CGCTATCAAT 
    GGCGGCAGGC GGAAGTCCTG TGTACAGTCG T

    Gene models with high sequence identity

    1. AT4G30600.1 [+] show detail - signal recognition particle receptor alpha subunit family protein
      E-value: 0; Score: 734.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.4e-60
    superfamily Signal recognition particle, SRP54 subunit, helical bundle 7.5e-09
    PatternScan Signal recognition particle, SRP54 subunit, GTPase 0
    HMMPanther SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SU 1.1e-144
    HMMPanther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO 1.1e-144
    HMMSmart ATPase, AAA+ type, core 9.4e-07
    HMMPfam Signal recognition particle receptor, alpha subunit, N-terminal 2.6e-66
    HMMPfam Signal recognition particle, SRP54 subunit, GTPase 5.1e-56
    HMMPfam Signal recognition particle, SRP54 subunit, helical bundle 2.5e-07
    Gene3D no description 8.2e-57

    See the detailed result >

    AT4G30600.1

    Model type
    Protein coding
    Short Description
    signal recognition particle receptor alpha subunit family protein
    Computational Description
    signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, signal recognition particle binding, GTP binding, GTPase activity, nucleotide binding; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 16825 Blast hits to 16740 proteins in 2884 species: Archae - 472; Bacteria - 10592; Metazoa - 551; Fungi - 433; Plants - 279; Viruses - 3; Other Eukaryotes - 4495 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR