K10914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10914

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10914

Determination of introduced cDNA(s)

  • J013111A10 - Rice Full-length cDNAs - Original: J013111A10

    full reading [+] show sequence

    Nucleotide sequence: J013111A10 - full reading 
    GGCGTCCGCC CATAGATCCC ACACAAATCC GTCCGAGTCC GACTCATCCC 
    AAATTCCCCG GCCATATCCT TTTCTTCGCC TGAGATCACC ACCTCCTCCT 
    ACCAGCAGCG AGAACAACCA GACGGAGGAG GGTTACCCCC TGCTTCTGCT 
    TGCGTTCGCG CACGCATGGA TCCCACAACC ACCACGACAG ATTCCGAGTG 
    CGACTTCATC AAGAAGATCC CTAGTTGGAT GATAAAGAAT TCGCCAATGC 
    ATTGTATGGA GGCCGGCCAC TTTGGCAAGG ATGCCGCCGC CGCCGCCGCC 
    GCCGCCACCG CGGACGCCAT GGAACATGCA CTCCCCTGCA GCGATCTTCA 
    CCACCTGAGA GTGGGCAAGA CGGCAGAGCA GAGCTGCTCG GTGTGCCTCA 
    AGAATTTCGA GGAGGGCGAC TACATCTGGT CGATGCCCTG CTCCCACACT 
    TTCCATCAGC TCTGCATCTT GGGCGACCGC TCCTGCAGGG TCTGTCACCC 
    GGCTGCTCCC CCATCCACGG AGGAGAAACC GGAGGCCCCT CGGACTGTTA 
    ATTGATTGAA TGAATTCTCG CGGAATCAGT GCTTGTTTAA CTGATCAATG 
    TCGTGGCGTG CAACAAATCT GCATTTCTCT GAAAATTGCA ACAAACCTGC 
    TACTCTCTGA ATAATCTGAA TTTTTTGTCT CCAGTTTTCC TGGGAATCCC 
    TTATGGAATA TTTCTTTTTG TCTCCAGTTA TCTGTGAATC CCTTATGGAA 
    ATTTGTAACC GGATGTTTAA ATTCACATAG TTATATATAT TTACTTCTGC 
    TTTCTTGATA TTCAGTTCAA TGTCTGTAAT AGCTCTTTGG GTCTTAGTAT 
    ATGTTAGCCT GGTTTTCTTG GGCCAAGCCA ATAAGAGAAA CAAAAGGGAT 
    CAACAGATTT GAGAATTCGT AATTCAGTGT ATATATAGTT CCTGAAAATA 
    ATTCAGGGAG GGTGTCCATA AAAATGTTAC AGCCGGTGAT GATTGTTATC 
    ATTTTTTTTT AAAAGTAGCT ATGCCTATTT TCATTGTATT ACTGTTTTAT 
    GTATGACAAT GACAGTGTCC CAATATTTCC C

    Gene models with high sequence identity

    1. AT4G26400.2 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-06; Score: 50.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 5.9e-05
    superfamily RING/U-box 9.1e-07
    HMMPanther gb def: SI:PACKTRZ.4 (Novel protein) (Fragmen 9.6e-07
    HMMPanther RING FINGER PROTEIN 24-RELATED 9.6e-07
    Gene3D no description 0.00022
    ProfileScan Zinc finger, RING-type 10.099
    Coil coiled-coil 0

    See the detailed result >

    AT4G26400.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR