K10920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10920

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10920

Determination of introduced cDNA(s)

  • J023058E10 - Rice Full-length cDNAs - Original: J023058E10

    full reading [+] show sequence

    Nucleotide sequence: J023058E10 - full reading 
    GGCGGATTCC ATTCTCCTCT TGGCATCACG AGGCGGCGCC GCTTGGTCTA 
    GCTAGTAGCC ACAGGGAGAG GTGGTAGCCG CAGCCGCCGC CGACGAGACC 
    TCGCCGCCGG GGGGAGGGCA CCATGTGTGG CATCCTCGCC GTGCTCGGCG 
    TCGCAGACGT CTCCCTCGCC AAGCGCTCCC GCATCATCGA GCTATCCCGC 
    CGGTTACGTC ATAGAGGCCC TGATTGGAGT GGTATACACT GCTATCAGGA 
    TTGCTATCTT GCACACCAGC GGTTGGCTAT TGTTGATCCC ACATCCGGAG 
    ACCAGCCGTT GTACAATGAG GACAAATCTG TTGTTGTGAC GGTGAATGGA 
    GAGATCTATA ACCATGAAGA ATTGAAAGCT AACCTGAAAT CTCATAAATT 
    CCAAACTGCT AGCGATTGTG AAGTTATTGC TCATCTGTAT GAGGAATATG 
    GGGAGGAATT TGTGGATATG TTGGATGGGA TGTTCGCTTT TGTTCTTCTT 
    GACACACGTG ATAAAAGCTT CATTGCAGCC CGTGATGCTA TTGGCATTTG 
    TCCTTTATAC ATGGGCTGGG GTCTTGATGG TTCGGTTTGG TTTTCGTCAG 
    AGATGAAGGC ATTAAGTGAT GATTGCGAGC GATTCATATC CTTCCCCCCT 
    GGGCACTTGT ACTCCAGCAA AACAGGTGGC CTAAGGAGAT GGTACAACCC 
    ACCATGGTTT TCTGAAAGCA TTCCCTCCAC CCCGTACAAT CCTCTTCTTC 
    TCCGACAGAG CTTTGAGAAG GCTATTATTA AGAGGCTAAT GACAGATGTG 
    CCATTTGGTG TTCTCTTGTC TGGTGGACTG GACTCTTCTT TGGTTGCATC 
    TGTTGTTTCG CGGCACTTGG CAGAGGCAAA AGTTGCCGCA CAGTGGGGAA 
    ACAAACTGCA TACATTTTGC ATTGGTTTGA AAGGTTCTCC TGATCTTAGA 
    GCTGCTAAGG AAGTTGCAGA CTACCTTGGT ACTGTTCATC ACGAACTCCA 
    CTTCACAGTG CAGGAAGGCA TTGATGCACT GGAGGAAGTC ATTTACCATG 
    TTGAGACATA TGATGTAACG ACAATTAGAG CAAGCACCCC AATGTTCTTG 
    ATGTCACGTA AAATTAAATC TTTGGGGGTG AAGATGGTTC TTTCGGGAGA 
    AGGTTCTGAT GAAATATTTG GCGGTTACCT TTATTTTCAC AAGGCACCAA 
    ACAAGAAGGA ATTCCATGAG GAAACATGTC GGAAGATAAA AGCCCTTCAT 
    TTATATGATT GCTTGAGAGC GAACAAATCA ACTTCTGCAT GGGGTGTTGA 
    GGCCCGTGTT CCGTTCCTTG ACAAAAACTT CATCAATGTA GCTATGGACA 
    TTGATCCTGA ATGGAAAATG ATAAAACGTG ATCTTGGCCG TATTGAGAAA 
    TGGGTTCTCC GGAATGCATT TGATGATGAG GAGAAGCCCT ATTTACCTAA 
    GCACATTCTA TACAGGCAAA AGGAGCAATT CAGTGATGGT GTTGGGTACA 
    GTTGGATTGA TGGATTGAAG GATCATGCAA ATGAACATGT ATCAGATTCC 
    ATGATGATGA ACGCTAGCTT TGTTTACCCA GAAAACACTC CAGTTACAAA 
    AGAAGCGTAC TATTATAGGA CAATATTCGA GAAATTCTTT CCCAAGAATG 
    CTGCTAGGTT GACAGTACCT GGAGGTCCTA GCGTCGCGTG CAGCACTGCT 
    AAAGCTGTTG AATGGGACGC AGCCTGGTCC AAAAACCTTG ATCCATCTGG 
    TCGTGCTGCT CTTGGTGTTC ATGATGCTGC ATATGAAGAT ACTCTACAAA 
    AATCTCCTGC CTCTGCCAAT CCTGTCTTGG ATAACGGCTT TGGTCCAGCC 
    CTTGGGGAAA GCATGGTCAA AACCGTTGCT TCAGCCACTG CCGTTTAACT 
    TTCTATCGTC GCATAAAACT CCGTAGTTTG TTGTTCTTGG TTCAATCCCA 
    GCTTCTTTCA GATGTCGTTA GTTTCTTCAA ACATGTAATG GAGATGCGTG 
    CTTTTCCTGG CTTGTTAGTT ACTGTATGCT TGTCATCGTG TATGTTTTCT 
    TTTCTTTTCC AATATGCAAA CTGTTTGGTC GTGGACTGAT CAGAACATTG 
    TAAATATGAA TAACCGCGAC TGATATCCTC AAGTTGCTTT TGGTTTGCAA 
    TAGTTCTAAT CTTGATGTTC TGCTGGGAAT CGGAAGATGT TATGCAGTAT 
    GCGTATTGTT GGGGTGTAAC CGTGTAAGTG CATCTGAAAT GAAGTTACGG 
    GCGATGGTAA CTGGG

    Gene models with high sequence identity

    1. AT5G10240.1 [+] show detail - asparagine synthetase 3
      E-value: 0; Score: 967.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Asparagine synthase, glutamine-hydrolyzing 6.6e-177
    Gene3D no description 2e-62
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 2.9e-103
    HMMPfam Asparagine synthase 7e-69
    superfamily Adenine nucleotide alpha hydrolases-like 3.8e-88
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 8.5e-80
    ProfileScan Glutamine amidotransferase, type II 37.274
    HMMPanther ASPARAGINE SYNTHETASE 1.4e-248

    See the detailed result >

    AT5G10240.1

    Model type
    Protein coding
    Short Description
    asparagine synthetase 3
    Curator Summary
    Encodes asparagine synthetase (ASN3).
    Computational Description
    asparagine synthetase 3 (ASN3); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: asparagine synthetase 2 (TAIR:AT5G65010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR