K10923

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10923

Determination of introduced cDNA(s)

J013070K21 - Rice Full-length cDNAs - Original: J013070K21

full reading [+] show sequence

GATTAATAAC TCCCCGAATT CGCCAAAGCA CAACCTTCCC CCACCAACCC 
ACCGCACCCA GAGCTTCGCC TCGACCTCGC CTTCGCCTTC GTCGCTGTAG 
CTGCCGCGAT CCAGGAGGAA AGGGAGTGGG GTGCGGATGG GATTGGGGGA 
GGAATGCGAC AGCTGCACGG GCTGAAAAGT TGCAGCAGCA GTAGTAGTAT 
ATGTCCCCCC GCGCCGCGGG GGTTGTCGCT GTGGGTGAAG GTGCGGTGCT 
CGCTCTCGCC TGCCTTTCCC GAGTTCGTTG GTGAGGGCAA TCTCCGGCCG 
GGCGCCTCGT CGGCTGGTGC TCCCCGATCG GGGGGCTGCT GCAAATCGCT 
GTTCGGATTG GAGCGGCCGG TCGGTCTGCG TTTGATTGCA GACATGGCGA 
ACTTCAGAGG TTTTCGGCGC GCAGTGATCG TGGTTGTTCT GTGCATTTGT 
CATGTGAATG TCGTAAGGGG ACAGAGCACT GACCCTGCTG AAGTAAATGC 
TCTCAGAGCT ATCAAAGGAA GATTAATTGA TCCGATGAAT AATCTTAAGA 
ATTGGAATAG TGGAGATCCA TGCACATCAA GTTGGAAAGG AGTCTTCTGT 
GACAATATAC CAATAAATAA TTATCTTCAT GTAACAGAAT TGCAGTTATT 
TAAGATGAAT CTTTCTGGGA CTTTGGCACC AGAGATCGGT CTTCTATCTC 
AATTGAAAAC ATTGGATTTC ATGTGGAACA ACTTGACTGG TAACATACCG 
AAAGAGATAG GGAATATCCA CACACTCAGG CTTATAACTT TGAACGGTAA 
TCAGCTATCT GGTTCTTTAC CAGATGAGAT TGGCTATCTC CAAAACTTGA 
ACAGATTACA GATAGACCAA AATGAAATAT CAGGACCCAT ACCTAAATCA 
TTTGCTAATT TAACAAGCAT GAGACATCTT CACATGAACA ATAACTCATT 
AAGTGGGCAA ATCCCATCTG AATTGTCAAG ATTGCCTGAA CTCCTCCATC 
TCCTTGTGGA CAGTAACAAT TTGTCTGGAC CTCTTCCTCC AGAACTAGCA 
GAGACTCGCA GTTTACAAAT ACTTCAGGCT GATAACAATA ACTTCAGCGG 
AAGTTCCATC CCTGCTGCAT ACGAAAACAT ACCAACACTT CTAAAGCTGA 
GTCTTAGGAA TTGCAATTTG CAAGGAGGTA TTCCAGATAT AAGTGGCATT 
CCTCAATTTG GCTATTTGGA TCTTAGCTGG AACCAACTGA CAGGATCTAT 
ACCAACTAAT AAACTTGCTT CAAACGTCAC TACAATTGAC TTGTCACATA 
ACTCTCTTAA TGGAACTATT CCATCAAGCT TTTCGGGGCT GCCTAATCTT 
CAATTCCTAT CGATTGAAGG AAATCACATA GATGGTGCTG TTCCATCGAC 
AATTTGGAGT AACATCACTT TTGTGGGAAA TCGAAGCCTT GTTGTGGACT 
TCC

Gene models with high sequence identity

AT1G06840.1 [+] show detail - Leucine-rich repeat protein kinase family protein
E-value: 7e-109; Score: 391.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Leucine-rich repeat	0.85
HMMPfam	Leucine-rich repeat	0.3
HMMPfam	Leucine-rich repeat	0.03
HMMPfam	Leucine-rich repeat-containing N-terminal domain, type 2	3e-08
superfamily	L domain-like	1.9e-64
Gene3D	no description	8.3e-51
Gene3D	no description	1.1e-12
HMMPanther	RECEPTOR PROTEIN KINASE-RELATED	5.8e-81
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	5.8e-81

See the detailed result >

AT1G06840.1

Model type: Protein coding
Short Description: Leucine-rich repeat protein kinase family protein
Computational Description: Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink).
Link: InterPro Scan - TAIR