K10924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10924

Determination of introduced cDNA(s)

J033107D14 - Rice Full-length cDNAs - Original: J033107D14

full reading [+] show sequence

GGCATCGCAT CCTCTCCCCA CACAATCCCC ACCCGGCCTA GCGAGCGAGA 
GAGAGGGAAG GGTTGCGACT TGCGACTCGC GAGCGGCGAG ATGGCGAAGG 
ACGTGGAGAT GGCGGTGCGG AACGGAGACG GCGGCGGCGG CGGCGGCTAC 
TACGCCACCC ACCCGCACGG CGGCGCCGGC GGCGAGGACG TCGACGACGA 
CGGCAAGCAG CGGCGAACCG GTAACGTATG GACGGCGAGC GCGCACATCA 
TCACGGCGGT GATCGGCTCC GGCGTGCTCT CTCTCGCATG GGCAACGGCG 
CAGCTCGGCT GGGTGGTCGG GCCGGTGACT CTGATGCTCT TCGCCCTCAT 
CACGTACTAC ACCTCTGGGC TCCTCGCCGA CTGCTACCGC ACTGGCGATC 
CGGTCAGCGG CAAGCGCAAC TACACCTACA TGGATGCCGT TGCGGCCTAC 
TTAGGTGGCT GGCAAGTCTG GTCCTGTGGT GTTTTCCAAT ATGTCAACCT 
GGTTGGGACA GCAATTGGGT ACACAATCAC AGCATCCATC AGCGCAGCGG 
CTGTGCACAA GGCCAACTGC TACCACAAGA ACGGCCACGA TGCCGATTGC 
GGTGTCTACG ACACCACGTA CATGATCGTC TTTGGAGTCG TCCAGATCTT 
CTTCTCCATG CTGCCCAACT TCAGTGACCT CTCATGGCTT TCCATCCTCG 
CCGCGGTCAT GTCATTCTCA TACTCGACCA TTGCCGTTGG CCTCTCGCTT 
GCGCGAACAA TATCAGGTGC TACTGGTAAG ACTACTCTGA CTGGCGTTGA 
GGTTGGAGTT GACGTCACTT CAGCCCAGAA GATCTGGCTC GCGTTCCAAG 
CGCTCGGTGA CATCGCGTTC GCCTACTCCT ACTCCATGAT CCTTATAGAA 
ATTCAGGACA CGGTGAAGTC TCCACCGGCG GAGAACAAGA CGATGAAGAA 
GGCAACGCTG CTGGGGGTGT CGACCACGAC GGCGTTCTAC ATGCTGTGCG 
GGTGCCTGGG GTACGCGGCG TTCGGGAACG CGGCGCCGGG GAACATGCTC 
ACCGGGTTCG GCTTCTACGA GCCCTACTGG CTGATCGACT TCGCCAACGT 
CTGCATCGTG GTCCACCTGG TCGGCGCCTA CCAGGTGTTC TGCCAGCCCA 
TCTTCGCCGC CGTCGAGACG TTCGCCGCCA GGCGGTGGCC GGGCTCGGAG 
TTCATCACCC GGGAGCGCCC CGTCGTGGCC GGCAGGTCGT TCAGCGTCAA 
CATGTTCAGG CTGACGTGGC GGACGGCGTT CGTGGTCGTC AGCACGGTGC 
TCGCCATCGT GATGCCCTTC TTCAACGACA TCCTGGGCTT CCTCGGCGCC 
GTCGGGTTCT GGCCGCTGAC GGTGTACTAC CCGGTGGAGA TGTACATCCG 
GCAGCGGCGG ATACAGCGGT ACACGTCCAG GTGGGTGGCG CTGCAGACGC 
TCAGCCTCCT CTGCTTCCTC GTCTCGCTCG CCTCCGCCGT CGCCTCCATC 
GAGGGCGTCA GCGAGTCGCT CAAGCACTAC GTCCCCTTCA AGACCAAGTC 
GTGATCCCGA TCACGACGGC CTTTTTTTTT TGCTTTTGCA TCCTGATGAA 
AAAAGATTTC AGAAACATAT GCACAACAAA TGCCGGAAGT TAGCCAAGAG 
TTTGGTCACC AGCTCGGTGC GTTGGTCGGT CAGGAGGAGG AGGGTTCAAC 
TTGTGTAGGT TAAGAAATGC TAGAGAGTAT GGAGACCATC TTCGATTGCT 
GCTCATGTAT AGAAAAAAGA GGAAGCTTCG TATTCATGTA ATGAATCGGA 
ATGTTTAACA AACAAGGCTT GTTCTGAACT CTTCTCAGGG ACAGGCATGG 
ATAACAGATT AAAGATAAAT GAATGTGTTA GACAAGGGCC

Gene models with high sequence identity

AT5G49630.1 [+] show detail - amino acid permease 6
E-value: 1e-169; Score: 593.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	AMINO ACID TRANSPORTER	2e-101
HMMPfam	Amino acid transporter, transmembrane	8.6e-112

See the detailed result >

AT5G49630.1

Model type: Protein coding
Short Description: amino acid permease 6
Curator Summary: Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
Computational Description: amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR