K10930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10930

Determination of introduced cDNA(s)

  • J023109L04 - Rice Full-length cDNAs - Original: J023109L04

    full reading [+] show sequence

    Nucleotide sequence: J023109L04 - full reading 
    GACTCCGCGC CGTCGCCAGC AGCCGCCGCC GCTGCCTCTC CTCCTCCTCC 
    CCTCGCCGCC GATCCAGTCC GGTCACTTTC AGTCTTTTTT CTTGAGGGGG 
    AGATGGCGGT TTCTTTCACC AACGTTAGCT CAGAGGCAGG CCTCAAAAAG 
    CTCGATGAGT ACCTTCTCAC TCGCAGCTAC ATCTCTGGGT ACCAAGCCTC 
    CAACGATGAC TTGGCTGTGT ACTCTGCATT TTCAACTGCG CCCTCTTCAA 
    GCTATACCAA TGTTGCTAGG TGGTTTACTC ACATTGATGC ACTCCTACGT 
    CTGAGTGGAG TTACTGCTGA TGGTCAAGGC GTAAAGGTCG AGTCGACAGC 
    TGTTCCTTCA GCTTCAACCC CTGATGTTGC TGATGCAAAG GCTCCTGCAG 
    CTGATGATGA CGATGATGAC GATGTTGACC TTTTTGGTGA GGAGACTGAA 
    GAGGAGAAGA AGGCAGCTGA GGAGCGTGCT GCTGCTGTCA AGGCTTCTGG 
    CAAGAAGAAG GAATCTGGGA AGTCCTCAGT GTTGCTTGAT GTCAAACCAT 
    GGGACGATGA GACTGACATG ACCAAATTGG AAGAAGCTGT GAGGAATGTT 
    AAGATGGAAG GCCTCCTTTG GGGCGCATCC AAGCTTGTCC CGGTTGGTTA 
    CGGTATCAAG AAATTGCAAA TCATGATGAC CATTGTCGAT GATCTTGTGT 
    CGGTTGATAG TCTGATTGAG GACTACTTCT ACACCGAACC AGCGAATGAG 
    TACATCCAGA GCTGCGACAT TGTTGCGTTC AACAAGATCT AGATCTTCCT 
    TGAGTCAGGT GATGGCGATC GGTGCACAAA GATAAAAAGA AAAATCCGGA 
    AGTTTGAATT ACCGTTGATA CTTCAATCTA GAAGTTTGAA TTACCATTGA 
    TGTGTCGTTC GTGGTGTCAA CTAGTACTTG AGCCCGTTTT GTGTTGAGAT 
    TGTAGCACTC TACTTCTACT GAGATCGTTT TCTCCTCCTT TAATGTTTAA 
    AGACCAATCA GGTTATTATT ACTGTGTCTG CCTGTGTCAC CATAGCGGCA 
    TTGTTGGTCG ATCCAGTTTT GATGCGGTCT TCAATTCTCC CGTCTTTCGC 
    TTTGCTTGAT TGCTTCATCG CTTTTGCGGC TAAAGTTTTT CTGCTCCTAC 
    CAAAACTGTA GGGGAAACTT TGGTTGTGCT GTTTGTTCTA TCTCTTATGC 
    ATTGCGCAGC CTGGTTTTTT CGCTCTTCTG AAGTATAGCC CTGTGCGCTC 
    TCATCAGGCC TGTCCTGAAA TACGTGATTT CCGTTCGGTA TCGATGTTCG 
    GTTTGTCACA CATATCTTCT ACTTTCTTTT CTGTAATGAA GAGCATTGTC 
    TACTGTTATC ACCT

    Gene models with high sequence identity

    1. AT1G30230.2 [+] show detail - Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
      E-value: 1e-61; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ELONGATION FACTOR 1-BETA 6.9e-142
    HMMPanther ELONGATION FACTOR 1-BETA 6.9e-142
    PatternScan Translation elongation factor EF1B, beta/delta chains, conserved site 0
    PatternScan Translation elongation factor EF1B, beta/delta chains, conserved site 0
    Gene3D Translation elongation factor EF1B/ribosomal protein S6 4.6e-38
    HMMPfam Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 5.8e-31
    HMMSmart Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 7.2e-34
    superfamily Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 2.1e-32
    Coil coiled-coil 0

    See the detailed result >

    AT1G30230.2

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
    Computational Description
    Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B/ribosomal protein S6 family protein (TAIR:AT2G18110.1); Has 1008 Blast hits to 1006 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 526; Fungi - 158; Plants - 163; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR